Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JNN53_RS02065 Genome accession   NZ_CP068826
Coordinates   463451..463918 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C030300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458451..468918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN53_RS02040 (JNN53_02040) rpsG 458592..459062 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JNN53_RS02045 (JNN53_02045) fusA 459159..461273 (+) 2115 WP_000124700.1 elongation factor G -
  JNN53_RS02050 (JNN53_02050) tuf 461344..462528 (+) 1185 WP_000031783.1 elongation factor Tu -
  JNN53_RS02055 (JNN53_02055) bfd 462711..462905 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JNN53_RS02060 (JNN53_02060) bfr 462978..463454 (+) 477 WP_000675515.1 bacterioferritin -
  JNN53_RS02065 (JNN53_02065) pilD 463451..463918 (-) 468 WP_000340159.1 A24 family peptidase Machinery gene
  JNN53_RS02070 (JNN53_02070) rpsJ 464297..464608 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JNN53_RS02075 (JNN53_02075) rplC 464641..465270 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JNN53_RS02080 (JNN53_02080) rplD 465281..465886 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JNN53_RS02085 (JNN53_02085) rplW 465883..466185 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JNN53_RS02090 (JNN53_02090) rplB 466203..467024 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JNN53_RS02095 (JNN53_02095) rpsS 467041..467319 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JNN53_RS02100 (JNN53_02100) rplV 467334..467666 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JNN53_RS02105 (JNN53_02105) rpsC 467684..468385 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JNN53_RS02110 (JNN53_02110) rplP 468398..468808 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=463525 JNN53_RS02065 WP_000340159.1 463451..463918(-) (pilD) [Escherichia coli strain RIVM_C030300]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=463525 JNN53_RS02065 WP_000340159.1 463451..463918(-) (pilD) [Escherichia coli strain RIVM_C030300]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368