Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HWU09_RS07725 Genome accession   NZ_CP058287
Coordinates   1628042..1628323 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain AL04     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623042..1633323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU09_RS07705 - 1623752..1625092 (-) 1341 WP_237003418.1 COG3014 family protein -
  HWU09_RS07715 comB4 1625414..1627777 (-) 2364 WP_237003419.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HWU09_RS07720 comB3 1627779..1628042 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  HWU09_RS07725 comB2 1628042..1628323 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HWU09_RS07730 - 1628468..1629295 (-) 828 WP_237003420.1 DUF5718 family protein -
  HWU09_RS07735 - 1629586..1630638 (-) 1053 WP_237003421.1 MnmA/TRMU family protein -
  HWU09_RS07740 dnaG 1630635..1632314 (-) 1680 WP_237003422.1 DNA primase -
  HWU09_RS07745 groES 1632589..1632945 (+) 357 WP_237003423.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=463481 HWU09_RS07725 WP_001272686.1 1628042..1628323(-) (comB2) [Helicobacter pylori strain AL04]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=463481 HWU09_RS07725 WP_001272686.1 1628042..1628323(-) (comB2) [Helicobacter pylori strain AL04]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989