Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPOK113_RS08360 | Genome accession | NC_020508 |
| Coordinates | 406326..407336 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664516.1 | Uniprot ID | - |
| Organism | Helicobacter pylori OK113 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 401326..412336
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOK113_RS02010 (HPOK113_0387) | - | 401413..401787 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| HPOK113_RS02015 (HPOK113_0388) | - | 402077..402679 (+) | 603 | WP_015427570.1 | outer membrane protein | - |
| HPOK113_RS02025 (HPOK113_0389) | - | 402811..403218 (-) | 408 | WP_015427571.1 | hypothetical protein | - |
| HPOK113_RS02030 (HPOK113_0390) | - | 403221..403463 (-) | 243 | WP_000944394.1 | PP0621 family protein | - |
| HPOK113_RS02035 (HPOK113_0391) | rsmG | 403457..403993 (-) | 537 | WP_001068805.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPOK113_RS02040 (HPOK113_0392) | queA | 403990..405027 (-) | 1038 | WP_015427572.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPOK113_RS02045 (HPOK113_0393) | tatC | 405031..405789 (-) | 759 | WP_015427573.1 | twin-arginine translocase subunit TatC | - |
| HPOK113_RS02050 (HPOK113_0394) | tatB | 405782..406258 (-) | 477 | WP_015427574.1 | Sec-independent protein translocase protein TatB | - |
| HPOK113_RS08360 (HPOK113_0395) | ruvB | 406326..407336 (-) | 1011 | WP_000664516.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPOK113_RS08365 (HPOK113_0396) | panB | 407337..408149 (-) | 813 | WP_015427575.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPOK113_RS02065 (HPOK113_0397) | - | 408298..409020 (+) | 723 | WP_015427576.1 | hypothetical protein | - |
| HPOK113_RS02070 (HPOK113_0398) | - | 409010..409864 (+) | 855 | WP_015427577.1 | outer membrane beta-barrel protein | - |
| HPOK113_RS02075 (HPOK113_0399) | - | 409873..410817 (+) | 945 | WP_015427578.1 | outer membrane beta-barrel protein | - |
| HPOK113_RS02080 (HPOK113_0400) | - | 410827..412149 (+) | 1323 | WP_015427579.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37307.27 Da Isoelectric Point: 6.0715
>NTDB_id=46347 HPOK113_RS08360 WP_000664516.1 406326..407336(-) (ruvB) [Helicobacter pylori OK113]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=46347 HPOK113_RS08360 WP_000664516.1 406326..407336(-) (ruvB) [Helicobacter pylori OK113]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCTATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCCAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGAAGAATCGCCACGCCCAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCTATTTTGACCAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCCAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGAAGAATCGCCACGCCCAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.87 |
96.131 |
0.518 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae R6 |
50.774 |
96.131 |
0.488 |
| ruvB | Streptococcus pneumoniae D39 |
50.774 |
96.131 |
0.488 |
| ruvB | Synechocystis sp. PCC 6803 |
51.104 |
94.345 |
0.482 |