Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HWU11_RS00090 Genome accession   NZ_CP058285
Coordinates   13721..14002 (+) Length   93 a.a.
NCBI ID   WP_001279601.1    Uniprot ID   A0AB74KP27
Organism   Helicobacter pylori strain BT302     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8721..19002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU11_RS00070 groES 9289..9645 (-) 357 WP_000671940.1 co-chaperone GroES -
  HWU11_RS00075 dnaG 9932..11611 (+) 1680 WP_237008473.1 DNA primase -
  HWU11_RS00080 - 11608..12660 (+) 1053 WP_237008474.1 MnmA/TRMU family protein -
  HWU11_RS00085 - 12749..13576 (+) 828 WP_237008475.1 DUF5718 family protein -
  HWU11_RS00090 comB2 13721..14002 (+) 282 WP_001279601.1 TrbC/VirB2 family protein Machinery gene
  HWU11_RS00095 comB3 14002..14265 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HWU11_RS00100 comB4 14267..16630 (+) 2364 WP_237008476.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HWU11_RS00110 - 16932..18272 (+) 1341 WP_237008477.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10583.82 Da        Isoelectric Point: 8.0163

>NTDB_id=463441 HWU11_RS00090 WP_001279601.1 13721..14002(+) (comB2) [Helicobacter pylori strain BT302]
MSDHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=463441 HWU11_RS00090 WP_001279601.1 13721..14002(+) (comB2) [Helicobacter pylori strain BT302]
ATGTCCGATCATTTTTTAAAAATCATTTTTTTGGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGAAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978