Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HWU15_RS02280 Genome accession   NZ_CP058281
Coordinates   460383..460667 (+) Length   94 a.a.
NCBI ID   WP_237015793.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hk711     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455383..465667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS02255 - 455910..457937 (-) 2028 WP_237015791.1 RNA degradosome polyphosphate kinase -
  HWU15_RS02265 - 458373..458960 (-) 588 Protein_441 restriction endonuclease subunit S -
  HWU15_RS02270 - 459015..459803 (+) 789 WP_237015792.1 integrase -
  HWU15_RS02275 - 459907..460386 (+) 480 WP_165552789.1 hypothetical protein -
  HWU15_RS02280 comB2 460383..460667 (+) 285 WP_237015793.1 TrbC/VirB2 family protein Machinery gene
  HWU15_RS02285 comB3 460678..460941 (+) 264 WP_237015794.1 competence protein ComB Machinery gene
  HWU15_RS02290 - 460952..461188 (+) 237 WP_237015795.1 hypothetical protein -
  HWU15_RS02295 - 461188..463764 (+) 2577 WP_237015796.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HWU15_RS02300 - 463766..463900 (+) 135 WP_041200005.1 hypothetical protein -
  HWU15_RS02305 - 463893..465026 (+) 1134 WP_237015797.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10735.08 Da        Isoelectric Point: 11.4620

>NTDB_id=463430 HWU15_RS02280 WP_237015793.1 460383..460667(+) (comB2) [Helicobacter pylori strain Hk711]
MKKLRHFRKLIAFLGFSPPLLQANMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=463430 HWU15_RS02280 WP_237015793.1 460383..460667(+) (comB2) [Helicobacter pylori strain Hk711]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACCTTTATTACAAGCGAATATGACTAC
CTTTTTTAATAGCATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTCATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

56.667

95.745

0.543