Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HWU15_RS00090 Genome accession   NZ_CP058281
Coordinates   13836..14117 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hk711     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8836..19117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU15_RS00070 groES 9202..9558 (-) 357 WP_180412724.1 co-chaperone GroES -
  HWU15_RS00075 dnaG 9834..11513 (+) 1680 WP_237015506.1 DNA primase -
  HWU15_RS00080 - 11510..12562 (+) 1053 WP_237015507.1 MnmA/TRMU family protein -
  HWU15_RS00085 - 12864..13691 (+) 828 WP_237015508.1 DUF5718 family protein -
  HWU15_RS00090 comB2 13836..14117 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HWU15_RS00095 - 14117..14381 (+) 265 Protein_13 competence protein ComB -
  HWU15_RS00100 comB4 14383..16746 (+) 2364 WP_237015509.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HWU15_RS00110 - 17067..18407 (+) 1341 WP_237016012.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=463419 HWU15_RS00090 WP_001272686.1 13836..14117(+) (comB2) [Helicobacter pylori strain Hk711]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=463419 HWU15_RS00090 WP_001272686.1 13836..14117(+) (comB2) [Helicobacter pylori strain Hk711]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTTAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTGTTCTTT
AAAGCCCCAAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989