Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   CQZ96_RS14550 Genome accession   NZ_CP058272
Coordinates   3110820..3111947 (-) Length   375 a.a.
NCBI ID   WP_105714234.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3105820..3116947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS14530 (CQZ96_014560) - 3106515..3107753 (-) 1239 WP_227515188.1 MFS transporter -
  CQZ96_RS14535 (CQZ96_014565) - 3107903..3108547 (+) 645 WP_004823720.1 TetR/AcrR family transcriptional regulator -
  CQZ96_RS14540 (CQZ96_014570) - 3108690..3109583 (+) 894 WP_004823721.1 DMT family transporter -
  CQZ96_RS14545 (CQZ96_014575) - 3110204..3110773 (-) 570 WP_096735350.1 L-threonylcarbamoyladenylate synthase -
  CQZ96_RS14550 (CQZ96_014580) dprA 3110820..3111947 (-) 1128 WP_105714234.1 DNA-processing protein DprA Machinery gene
  CQZ96_RS14555 (CQZ96_014585) tsaP 3111971..3113122 (-) 1152 WP_034618195.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CQZ96_RS14560 (CQZ96_014590) def 3113246..3113776 (+) 531 WP_004723400.1 peptide deformylase -
  CQZ96_RS14565 (CQZ96_014595) - 3113846..3114343 (+) 498 WP_411909884.1 DUF2946 family protein -
  CQZ96_RS14570 (CQZ96_014600) - 3114414..3116492 (+) 2079 WP_105714236.1 TonB-dependent copper receptor -
  CQZ96_RS14575 (CQZ96_014605) - 3116535..3116777 (+) 243 WP_004823727.1 hypothetical protein -

Sequence


Protein


Download         Length: 375 a.a.        Molecular weight: 42090.91 Da        Isoelectric Point: 6.4588

>NTDB_id=463362 CQZ96_RS14550 WP_105714234.1 3110820..3111947(-) (dprA) [Acinetobacter sp. MYb10]
MLKQISNDQYDAIRLWYLVQHSLSAFHKLETHFGSIAKALQAENLNRWSEAKIHKNHLERASEFFTALGQSKFQVCFDKI
QQHTDFILLDTDPHYPQQLLPYPDHPPILFGKGAFQNLSQPQIAIVGSRKPSPHGKQVAYDFAYYLSEKGFFITSGLALG
IDAAAHMGGLKHHRTIAVIGTGLDLVYPSQNRQLQEQILQHSGTILTEYLPETQPIQRNFPYRNRIVSGLSLGVVVAEAQ
LGSGSLITAQAAAEQGKVIFAIPGHIYGEHHQGCHQLIREGAILVDHPEQIVEDLALPTQWHCAQQSESLSPMPEIPEHL
FKLYQLLDWIGQDLDTLAQNANLDIAQLTSDLMELELLGHCIQQSGLYLRCRVSY

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=463362 CQZ96_RS14550 WP_105714234.1 3110820..3111947(-) (dprA) [Acinetobacter sp. MYb10]
ATGTTGAAGCAAATATCCAATGACCAATATGATGCCATCAGACTTTGGTATTTGGTTCAACATTCGCTCAGCGCTTTTCA
TAAATTAGAAACACATTTTGGTTCTATCGCAAAAGCGCTGCAAGCTGAAAATTTAAACCGCTGGTCTGAAGCCAAAATTC
ATAAAAACCATCTTGAAAGAGCCAGTGAATTTTTCACTGCGCTTGGGCAATCCAAATTTCAAGTTTGCTTCGATAAAATT
CAACAACATACAGATTTTATTCTTTTAGATACCGACCCTCATTATCCTCAACAACTGCTACCTTATCCTGATCATCCACC
AATTCTATTTGGTAAAGGTGCATTTCAGAATCTAAGTCAACCGCAAATCGCCATCGTGGGTAGCCGAAAGCCAAGTCCGC
ATGGCAAACAAGTGGCTTATGATTTTGCTTACTATTTGAGTGAAAAGGGCTTTTTTATTACCAGTGGCCTAGCACTGGGA
ATTGATGCCGCTGCACATATGGGTGGACTAAAACACCATCGAACCATTGCGGTGATCGGTACAGGCTTAGATCTGGTTTA
TCCTAGTCAAAATAGACAGTTACAAGAACAAATTTTGCAGCATTCAGGAACGATTTTGACTGAATACCTGCCAGAAACTC
AGCCTATTCAGCGCAATTTTCCCTATCGAAATCGGATCGTGAGTGGTTTGAGCTTAGGTGTTGTTGTCGCAGAAGCACAA
CTGGGTAGTGGTTCACTGATTACGGCGCAAGCTGCCGCAGAACAAGGTAAAGTGATTTTTGCAATTCCAGGGCATATTTA
TGGAGAGCATCATCAAGGATGTCATCAGCTCATTCGTGAAGGGGCCATTCTGGTTGATCATCCAGAACAGATTGTTGAAG
ATTTAGCACTTCCCACCCAATGGCATTGTGCACAACAGTCTGAATCACTCTCCCCAATGCCAGAAATTCCCGAGCATTTA
TTTAAGCTGTATCAATTGCTGGATTGGATTGGGCAAGACTTAGATACGCTTGCTCAAAACGCAAATTTAGACATTGCACA
ACTCACAAGCGATCTTATGGAATTAGAACTTTTGGGTCACTGTATTCAACAATCTGGGCTGTACTTACGTTGCCGAGTCA
GTTATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.533

100

0.645

  dprA Acinetobacter baumannii D1279779

64

100

0.64

  dprA Acinetobacter baylyi ADP1

60.836

100

0.621