Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HPOK113_RS05700 Genome accession   NC_020508
Coordinates   1193855..1194628 (+) Length   257 a.a.
NCBI ID   WP_015428166.1    Uniprot ID   -
Organism   Helicobacter pylori OK113     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1188855..1199628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK113_RS05695 (HPOK113_1117) hopL 1190120..1193842 (+) 3723 WP_015428165.1 Hop family outer membrane protein HopL -
  HPOK113_RS05700 (HPOK113_1118) proC 1193855..1194628 (+) 774 WP_015428166.1 pyrroline-5-carboxylate reductase Machinery gene
  HPOK113_RS05705 (HPOK113_1119) fic 1194655..1195188 (+) 534 WP_000549887.1 protein adenylyltransferase Fic -
  HPOK113_RS05710 (HPOK113_1120) ybeY 1195245..1195667 (-) 423 WP_015428167.1 rRNA maturation RNase YbeY -
  HPOK113_RS05715 (HPOK113_1121) - 1195722..1196216 (-) 495 WP_015428168.1 flavodoxin -
  HPOK113_RS05720 (HPOK113_1122) - 1196308..1196889 (-) 582 WP_001879496.1 DedA family protein -
  HPOK113_RS05725 (HPOK113_1123) ccoS 1197015..1197206 (+) 192 WP_001090956.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HPOK113_RS05730 (HPOK113_1124) - 1197232..1198203 (+) 972 WP_015428169.1 NAD(P)-binding domain-containing protein -
  HPOK113_RS05735 (HPOK113_1125) - 1198210..1199370 (-) 1161 WP_015428170.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28192.68 Da        Isoelectric Point: 7.6640

>NTDB_id=46336 HPOK113_RS05700 WP_015428166.1 1193855..1194628(+) (proC) [Helicobacter pylori OK113]
MEILQFIGYGNMAQAILEGSHETLSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKEAIDTHQKFVFLLFKPYNLKDFN
YQGQAQSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVAPSISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=46336 HPOK113_RS05700 WP_015428166.1 1193855..1194628(+) (proC) [Helicobacter pylori OK113]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAAACTTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTACAAAGAAGCTATTGATACACACCAAAAATTCGTGTTTTTACTTTTCAAACCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCCAAAGCGTTTTGAGCGCGTTAGCCGGGGTAAATTTTGAAGCTTTAAGCAATGCGATCAATTCTTT
ACATTACTTAAAATGCATGCCCAACATTGCGAGCAAATTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCGGTTGCGC
CTTCAATAAGCGAGAAAGCTTTGAGTATTATTGAAAGTTTTGGGAATTGCGTGCGAGTGGGAAACGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCCGGCATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CAGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCCACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTAAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366