Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HW369_RS03440 Genome accession   NZ_CP058255
Coordinates   673251..675608 (+) Length   785 a.a.
NCBI ID   WP_195695873.1    Uniprot ID   -
Organism   Priestia megaterium strain BHS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 668251..680608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW369_RS03420 - 669608..670024 (+) 417 WP_013059297.1 Rrf2 family transcriptional regulator -
  HW369_RS03425 - 670048..671190 (+) 1143 WP_050688544.1 cysteine desulfurase family protein -
  HW369_RS03430 mnmA 671297..672409 (+) 1113 WP_195695872.1 tRNA 2-thiouridine(34) synthase MnmA -
  HW369_RS03435 - 672567..673226 (+) 660 WP_013085089.1 tetratricopeptide repeat protein -
  HW369_RS03440 recD2 673251..675608 (+) 2358 WP_195695873.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HW369_RS03445 - 675750..675941 (+) 192 WP_013059292.1 hypothetical protein -
  HW369_RS03450 - 675967..676101 (+) 135 WP_013059291.1 YrzQ family protein -
  HW369_RS03455 - 676216..677277 (+) 1062 WP_013059290.1 AI-2E family transporter -
  HW369_RS03460 alaS 677666..680299 (+) 2634 WP_195695874.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88844.31 Da        Isoelectric Point: 5.0673

>NTDB_id=463120 HW369_RS03440 WP_195695873.1 673251..675608(+) (recD2) [Priestia megaterium strain BHS1]
MNEEQVNPSQPERHYISGMSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALLSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=463120 HW369_RS03440 WP_195695873.1 673251..675608(+) (recD2) [Priestia megaterium strain BHS1]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCATGTCGATTGTAACCGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTCA
CAGGTTATTTTCCTAAGCTCAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAATATCTGTCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAACATTGTAGACGCCTTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGTTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATACGTCATTGAGCAAGAA
TGCAATCAAATGGGGCATGTATACGTTACGGCAGACCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGGAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTAGACGCGTTAAAAGCGGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGTTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCGGAATCAGAATTCTTATTGGCTCTGGGTGAACTAGAAGAGCGCTTAGACGTCCAATATGCACCGTC
TCAGCGCAAGGGTATACAAACCGCTTTATTGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACAG
TTATTAAAGGAATAGTCGAACTTTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGACTATAAAAAAGATGAAGCT
TTTCCGGTTTTACTTGTGGCACCCACGGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACGAT
TCACCGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGATCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTGCTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACAGGCAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGTTGTCAAGGACAGCACATTACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTTTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTGAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTTTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTTAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGAGAAGACGAAGCGTTTCAGCTTGGAGTTAGCCGAAATGAAGACAGCGTTCGCCAAAC
GAATTTACAGCCGCTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

AAA domain (AAA_30)

(344-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.811

99.618

0.636