Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JNN43_RS02295 Genome accession   NZ_CP068821
Coordinates   505098..505565 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C029952     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500098..510565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN43_RS02270 (JNN43_02270) rpsG 500239..500709 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JNN43_RS02275 (JNN43_02275) fusA 500806..502920 (+) 2115 WP_000124700.1 elongation factor G -
  JNN43_RS02280 (JNN43_02280) tuf 502991..504175 (+) 1185 WP_000031783.1 elongation factor Tu -
  JNN43_RS02285 (JNN43_02285) bfd 504358..504552 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JNN43_RS02290 (JNN43_02290) bfr 504625..505101 (+) 477 WP_000675515.1 bacterioferritin -
  JNN43_RS02295 (JNN43_02295) pilD 505098..505565 (-) 468 WP_000340159.1 A24 family peptidase Machinery gene
  JNN43_RS02300 (JNN43_02300) rpsJ 505944..506255 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JNN43_RS02305 (JNN43_02305) rplC 506288..506917 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JNN43_RS02310 (JNN43_02310) rplD 506928..507533 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JNN43_RS02315 (JNN43_02315) rplW 507530..507832 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JNN43_RS02320 (JNN43_02320) rplB 507850..508671 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JNN43_RS02325 (JNN43_02325) rpsS 508688..508966 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JNN43_RS02330 (JNN43_02330) rplV 508981..509313 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JNN43_RS02335 (JNN43_02335) rpsC 509331..510032 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JNN43_RS02340 (JNN43_02340) rplP 510045..510455 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=463106 JNN43_RS02295 WP_000340159.1 505098..505565(-) (pilD) [Escherichia coli strain RIVM_C029952]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=463106 JNN43_RS02295 WP_000340159.1 505098..505565(-) (pilD) [Escherichia coli strain RIVM_C029952]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368