Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JNN41_RS18380 Genome accession   NZ_CP068820
Coordinates   3826413..3826880 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C029951     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3821413..3831880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN41_RS18355 (JNN41_18355) rpsG 3821554..3822024 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JNN41_RS18360 (JNN41_18360) fusA 3822121..3824235 (+) 2115 WP_000124700.1 elongation factor G -
  JNN41_RS18365 (JNN41_18365) tuf 3824306..3825490 (+) 1185 WP_000031783.1 elongation factor Tu -
  JNN41_RS18370 (JNN41_18370) bfd 3825673..3825867 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JNN41_RS18375 (JNN41_18375) bfr 3825940..3826416 (+) 477 WP_000675515.1 bacterioferritin -
  JNN41_RS18380 (JNN41_18380) pilD 3826413..3826880 (-) 468 WP_000340159.1 A24 family peptidase Machinery gene
  JNN41_RS18385 (JNN41_18385) rpsJ 3827259..3827570 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JNN41_RS18390 (JNN41_18390) rplC 3827603..3828232 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JNN41_RS18395 (JNN41_18395) rplD 3828243..3828848 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JNN41_RS18400 (JNN41_18400) rplW 3828845..3829147 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JNN41_RS18405 (JNN41_18405) rplB 3829165..3829986 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JNN41_RS18410 (JNN41_18410) rpsS 3830003..3830281 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JNN41_RS18415 (JNN41_18415) rplV 3830296..3830628 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JNN41_RS18420 (JNN41_18420) rpsC 3830646..3831347 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JNN41_RS18425 (JNN41_18425) rplP 3831360..3831770 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=463071 JNN41_RS18380 WP_000340159.1 3826413..3826880(-) (pilD) [Escherichia coli strain RIVM_C029951]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=463071 JNN41_RS18380 WP_000340159.1 3826413..3826880(-) (pilD) [Escherichia coli strain RIVM_C029951]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368