Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HWU18_RS00095 Genome accession   NZ_CP058252
Coordinates   13029..13310 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain NP05-124     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8029..18310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU18_RS00075 groES 8597..8953 (-) 357 WP_000671934.1 co-chaperone GroES -
  HWU18_RS00080 dnaG 9236..10915 (+) 1680 WP_237004362.1 DNA primase -
  HWU18_RS00085 - 10912..11964 (+) 1053 WP_237004363.1 MnmA/TRMU family protein -
  HWU18_RS00090 - 12057..12884 (+) 828 WP_237004364.1 DUF5718 family protein -
  HWU18_RS00095 comB2 13029..13310 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HWU18_RS00100 comB3 13310..13573 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  HWU18_RS00105 comB4 13575..15938 (+) 2364 WP_237004365.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HWU18_RS00115 - 16240..17580 (+) 1341 WP_237004366.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=463062 HWU18_RS00095 WP_001272686.1 13029..13310(+) (comB2) [Helicobacter pylori strain NP05-124]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=463062 HWU18_RS00095 WP_001272686.1 13029..13310(+) (comB2) [Helicobacter pylori strain NP05-124]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAACTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989