Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HWU19_RS06610 Genome accession   NZ_CP058251
Coordinates   1388796..1389080 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain UBN18     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383796..1394080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU19_RS06585 - 1384108..1384955 (-) 848 Protein_1283 DNA/RNA non-specific endonuclease -
  HWU19_RS06590 - 1385080..1387023 (-) 1944 WP_237016380.1 site-specific DNA-methyltransferase -
  HWU19_RS06595 - 1387017..1387373 (-) 357 Protein_1285 restriction endonuclease -
  HWU19_RS06600 - 1387428..1388216 (+) 789 WP_237016381.1 integrase -
  HWU19_RS06605 - 1388320..1388799 (+) 480 WP_237016382.1 hypothetical protein -
  HWU19_RS06610 comB2 1388796..1389080 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  HWU19_RS06615 comB3 1389091..1389354 (+) 264 WP_001177711.1 hypothetical protein Machinery gene
  HWU19_RS06620 - 1389366..1389602 (+) 237 WP_140522774.1 hypothetical protein -
  HWU19_RS06625 - 1389602..1392178 (+) 2577 WP_237016383.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  HWU19_RS06630 - 1392175..1392315 (+) 141 WP_000789926.1 hypothetical protein -
  HWU19_RS06635 - 1392308..1393444 (+) 1137 WP_000067684.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=463057 HWU19_RS06610 WP_000736478.1 1388796..1389080(+) (comB2) [Helicobacter pylori strain UBN18]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=463057 HWU19_RS06610 WP_000736478.1 1388796..1389080(+) (comB2) [Helicobacter pylori strain UBN18]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553