Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HWI84_RS00090 Genome accession   NZ_CP058250
Coordinates   11516..11797 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain AL02     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6516..16797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI84_RS00070 groES 6879..7235 (-) 357 WP_000671941.1 co-chaperone GroES -
  HWI84_RS00075 dnaG 7524..9203 (+) 1680 WP_237013131.1 DNA primase -
  HWI84_RS00080 - 9200..10252 (+) 1053 WP_237013132.1 MnmA/TRMU family protein -
  HWI84_RS00085 - 10544..11371 (+) 828 WP_237013133.1 DUF5718 family protein -
  HWI84_RS00090 comB2 11516..11797 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HWI84_RS00095 comB3 11797..12060 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HWI84_RS00100 comB4 12062..14425 (+) 2364 WP_237013134.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HWI84_RS00110 - 14727..16067 (+) 1341 WP_237013135.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=463019 HWI84_RS00090 WP_001272686.1 11516..11797(+) (comB2) [Helicobacter pylori strain AL02]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=463019 HWI84_RS00090 WP_001272686.1 11516..11797(+) (comB2) [Helicobacter pylori strain AL02]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989