Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HWH77_RS18645 Genome accession   NZ_CP058216
Coordinates   3697783..3698562 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain LF01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3692783..3703562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWH77_RS18625 (HWH77_18630) trmFO 3693470..3694777 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HWH77_RS18630 (HWH77_18635) xerC 3694847..3695764 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  HWH77_RS18635 (HWH77_18640) hslV 3695780..3696325 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HWH77_RS18640 (HWH77_18645) hslU 3696342..3697745 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  HWH77_RS18645 (HWH77_18650) codY 3697783..3698562 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HWH77_RS18650 (HWH77_18655) flgB 3698916..3699305 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  HWH77_RS18655 (HWH77_18660) flgC 3699305..3699757 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  HWH77_RS18660 (HWH77_18665) fliE 3699768..3700088 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HWH77_RS18665 (HWH77_18670) fliF 3700131..3701741 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  HWH77_RS18670 (HWH77_18675) fliG 3701754..3702770 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HWH77_RS18675 (HWH77_18680) fliH 3702763..3703518 (+) 756 WP_060386938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=462743 HWH77_RS18645 WP_003154263.1 3697783..3698562(+) (codY) [Bacillus velezensis strain LF01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=462743 HWH77_RS18645 WP_003154263.1 3697783..3698562(+) (codY) [Bacillus velezensis strain LF01]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471