Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JNN62_RS02310 Genome accession   NZ_CP068813
Coordinates   510023..510490 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C029033     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505023..515490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN62_RS02285 (JNN62_02285) rpsG 505164..505634 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JNN62_RS02290 (JNN62_02290) fusA 505731..507845 (+) 2115 WP_000124700.1 elongation factor G -
  JNN62_RS02295 (JNN62_02295) tuf 507916..509100 (+) 1185 WP_000031783.1 elongation factor Tu -
  JNN62_RS02300 (JNN62_02300) bfd 509283..509477 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JNN62_RS02305 (JNN62_02305) bfr 509550..510026 (+) 477 WP_000675515.1 bacterioferritin -
  JNN62_RS02310 (JNN62_02310) pilD 510023..510490 (-) 468 WP_000340159.1 A24 family peptidase Machinery gene
  JNN62_RS02315 (JNN62_02315) rpsJ 510869..511180 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JNN62_RS02320 (JNN62_02320) rplC 511213..511842 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JNN62_RS02325 (JNN62_02325) rplD 511853..512458 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JNN62_RS02330 (JNN62_02330) rplW 512455..512757 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JNN62_RS02335 (JNN62_02335) rplB 512775..513596 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JNN62_RS02340 (JNN62_02340) rpsS 513613..513891 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JNN62_RS02345 (JNN62_02345) rplV 513906..514238 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JNN62_RS02350 (JNN62_02350) rpsC 514256..514957 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JNN62_RS02355 (JNN62_02355) rplP 514970..515380 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=462416 JNN62_RS02310 WP_000340159.1 510023..510490(-) (pilD) [Escherichia coli strain RIVM_C029033]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=462416 JNN62_RS02310 WP_000340159.1 510023..510490(-) (pilD) [Escherichia coli strain RIVM_C029033]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368