Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JNN60_RS02060 Genome accession   NZ_CP068810
Coordinates   463386..463853 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C028536     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 458386..468853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN60_RS02035 (JNN60_02035) rpsG 458527..458997 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JNN60_RS02040 (JNN60_02040) fusA 459094..461208 (+) 2115 WP_000124700.1 elongation factor G -
  JNN60_RS02045 (JNN60_02045) tuf 461279..462463 (+) 1185 WP_000031783.1 elongation factor Tu -
  JNN60_RS02050 (JNN60_02050) bfd 462646..462840 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JNN60_RS02055 (JNN60_02055) bfr 462913..463389 (+) 477 WP_000675515.1 bacterioferritin -
  JNN60_RS02060 (JNN60_02060) pilD 463386..463853 (-) 468 WP_000340159.1 A24 family peptidase Machinery gene
  JNN60_RS02065 (JNN60_02065) rpsJ 464232..464543 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JNN60_RS02070 (JNN60_02070) rplC 464576..465205 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JNN60_RS02075 (JNN60_02075) rplD 465216..465821 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JNN60_RS02080 (JNN60_02080) rplW 465818..466120 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JNN60_RS02085 (JNN60_02085) rplB 466138..466959 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JNN60_RS02090 (JNN60_02090) rpsS 466976..467254 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JNN60_RS02095 (JNN60_02095) rplV 467269..467601 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JNN60_RS02100 (JNN60_02100) rpsC 467619..468320 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JNN60_RS02105 (JNN60_02105) rplP 468333..468743 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=462158 JNN60_RS02060 WP_000340159.1 463386..463853(-) (pilD) [Escherichia coli strain RIVM_C028536]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=462158 JNN60_RS02060 WP_000340159.1 463386..463853(-) (pilD) [Escherichia coli strain RIVM_C028536]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368