Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JNN51_RS11875 Genome accession   NZ_CP068807
Coordinates   2443693..2444160 (+) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C018583     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2438693..2449160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN51_RS11830 (JNN51_11830) rplP 2438803..2439213 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  JNN51_RS11835 (JNN51_11835) rpsC 2439226..2439927 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  JNN51_RS11840 (JNN51_11840) rplV 2439945..2440277 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  JNN51_RS11845 (JNN51_11845) rpsS 2440292..2440570 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  JNN51_RS11850 (JNN51_11850) rplB 2440587..2441408 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  JNN51_RS11855 (JNN51_11855) rplW 2441426..2441728 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  JNN51_RS11860 (JNN51_11860) rplD 2441725..2442330 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  JNN51_RS11865 (JNN51_11865) rplC 2442341..2442970 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  JNN51_RS11870 (JNN51_11870) rpsJ 2443003..2443314 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  JNN51_RS11875 (JNN51_11875) pilD 2443693..2444160 (+) 468 WP_000340159.1 A24 family peptidase Machinery gene
  JNN51_RS11880 (JNN51_11880) bfr 2444157..2444633 (-) 477 WP_000675515.1 bacterioferritin -
  JNN51_RS11885 (JNN51_11885) bfd 2444706..2444900 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JNN51_RS11890 (JNN51_11890) tuf 2445083..2446267 (-) 1185 WP_000031783.1 elongation factor Tu -
  JNN51_RS11895 (JNN51_11895) fusA 2446338..2448452 (-) 2115 WP_000124700.1 elongation factor G -
  JNN51_RS11900 (JNN51_11900) rpsG 2448549..2449019 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=461925 JNN51_RS11875 WP_000340159.1 2443693..2444160(+) (pilD) [Escherichia coli strain RIVM_C018583]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=461925 JNN51_RS11875 WP_000340159.1 2443693..2444160(+) (pilD) [Escherichia coli strain RIVM_C018583]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368