Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DRO_RS09535 Genome accession   NZ_CP068791
Coordinates   1916001..1917305 (+) Length   434 a.a.
NCBI ID   WP_010888533.1    Uniprot ID   Q9RT67
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1911001..1922305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRO_RS09505 (DRO_1869) coaE 1911477..1912100 (+) 624 WP_010888527.1 dephospho-CoA kinase -
  DRO_RS09510 (DRO_1870) - 1912218..1913159 (-) 942 WP_034350050.1 peptidylprolyl isomerase -
  DRO_RS09515 (DRO_1871) - 1913260..1913748 (-) 489 WP_027479805.1 Lrp/AsnC family transcriptional regulator -
  DRO_RS09520 (DRO_1872) ald 1913913..1915019 (+) 1107 WP_027479806.1 alanine dehydrogenase -
  DRO_RS09525 (DRO_1873) - 1915065..1915340 (+) 276 WP_165439358.1 hypothetical protein -
  DRO_RS09530 (DRO_1874) - 1915498..1915896 (-) 399 WP_010888532.1 hypothetical protein -
  DRO_RS09535 (DRO_1875) rarA 1916001..1917305 (+) 1305 WP_010888533.1 replication-associated recombination protein A Machinery gene
  DRO_RS09540 (DRO_1876) - 1917348..1917536 (-) 189 WP_027479807.1 hypothetical protein -
  DRO_RS09545 (DRO_1877) - 1917604..1918173 (-) 570 WP_010888534.1 DUF1572 family protein -
  DRO_RS09550 (DRO_1878) - 1918191..1918829 (-) 639 WP_010888535.1 hypothetical protein -
  DRO_RS09555 (DRO_1879) - 1918813..1919301 (-) 489 WP_010888536.1 hypothetical protein -
  DRO_RS09560 (DRO_1880) - 1919530..1921677 (-) 2148 WP_010888537.1 ATP-dependent RecD-like DNA helicase -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 47050.45 Da        Isoelectric Point: 5.4977

>NTDB_id=461038 DRO_RS09535 WP_010888533.1 1916001..1917305(+) (rarA) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
MTLFDPPAPLAERLRPRTVAEVAGQSHLLGAGKPLTRVLQSGRLGSLILWGPPGVGKTTLARLLAGEVGAHFIALSAVSA
GVKDVRDAVAEAEREQARGRRTVLFLDEIHRFNKAQQDALLPHVESGLLTLIGATTENPSFEVNPALRSRARTLVLEALS
PEDVLALLRRALSDERGLPGVEAEDSALELLARLAEGDARRALSTLEVAATLANPVTEEAVTEAFGRHLPAMDKNGEDFY
NLISALHKSVRASHPDAALYWLARMLQGGADPHYVARRIVRMASEDIGLADPQALRLTIAARDSMEFLGSPEGDLALAQA
VVYLALAPKSNSVYVAWKKTVRAVQEGESLPVPLHLRNAPTALMKGQGYGRGYAYYFDDPAGSFEQNYLPDGVQLDLYQP
TGEGWEARMTERWRKLMTAHGELAPEAEEQSAEN

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=461038 DRO_RS09535 WP_010888533.1 1916001..1917305(+) (rarA) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
GTGACGCTCTTTGACCCGCCTGCTCCCCTCGCCGAACGCCTGCGCCCGCGCACCGTGGCCGAGGTGGCCGGGCAGTCGCA
CCTGCTCGGGGCCGGCAAGCCGCTGACGCGCGTGCTGCAAAGTGGCCGCCTGGGGTCGCTGATTTTGTGGGGGCCGCCCG
GCGTGGGCAAAACGACGCTGGCGCGGCTGCTCGCGGGCGAAGTCGGCGCGCACTTCATCGCGCTTTCGGCGGTGTCGGCG
GGCGTGAAGGACGTGCGCGACGCGGTAGCCGAGGCCGAGCGTGAACAGGCGCGGGGCCGGCGCACGGTGCTGTTTCTGGA
CGAGATTCACCGCTTCAACAAGGCTCAGCAAGACGCCCTGCTGCCCCACGTGGAGTCGGGGCTGCTCACCCTGATTGGCG
CGACCACCGAGAACCCAAGTTTCGAGGTCAACCCGGCGCTGCGCTCACGGGCCCGGACGCTGGTGCTCGAAGCGCTCTCG
CCGGAGGACGTGCTCGCCCTGCTGCGCCGCGCCCTGAGCGACGAGCGCGGGCTGCCGGGGGTGGAGGCGGAGGACAGCGC
CTTGGAACTGCTCGCCCGTCTTGCCGAAGGCGACGCCCGCCGCGCCCTGAGTACGCTCGAAGTCGCCGCCACCCTCGCCA
ATCCGGTGACCGAGGAAGCCGTGACCGAGGCGTTCGGACGTCACCTGCCGGCGATGGACAAGAACGGCGAGGACTTCTAC
AACCTGATTTCGGCGCTGCACAAGTCGGTGCGGGCCTCGCACCCCGACGCGGCGCTGTACTGGCTGGCGCGAATGCTTCA
GGGTGGCGCCGACCCGCACTACGTCGCTCGGCGCATCGTCCGCATGGCGTCGGAGGACATCGGGCTGGCCGACCCGCAAG
CACTCCGGCTGACCATCGCGGCGCGCGACAGCATGGAATTTCTGGGCAGTCCCGAAGGCGACCTCGCGCTGGCGCAGGCA
GTGGTGTACCTCGCCCTCGCGCCCAAGAGCAACAGCGTGTACGTGGCCTGGAAAAAGACTGTGCGCGCCGTGCAGGAAGG
CGAATCGCTGCCCGTGCCGCTGCACCTGCGCAACGCGCCCACCGCGCTGATGAAAGGGCAGGGCTATGGCCGGGGCTACG
CCTACTATTTCGACGACCCGGCAGGCTCCTTCGAGCAAAATTACCTGCCCGACGGCGTGCAGCTCGACCTCTATCAACCG
ACCGGCGAAGGTTGGGAAGCCCGCATGACCGAGCGCTGGCGCAAGCTGATGACGGCGCACGGCGAGCTGGCGCCAGAAGC
AGAAGAGCAGAGCGCGGAGAACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(253-416)

AAA C-terminal domain (AAA_assoc_2)

(181-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(47-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RT67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.192

97.005

0.38