Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   DRO_RS03935 Genome accession   NZ_CP068791
Coordinates   783097..784272 (+) Length   391 a.a.
NCBI ID   WP_010887416.1    Uniprot ID   Q9RW99
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 778097..789272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRO_RS03915 (DRO_0762) - 778816..780144 (+) 1329 WP_227086001.1 PQQ-binding-like beta-propeller repeat protein -
  DRO_RS03920 (DRO_0763) - 780153..780650 (+) 498 WP_010887413.1 short-chain dehydrogenase -
  DRO_RS03925 (DRO_0764) - 780678..781979 (+) 1302 WP_010887414.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DRO_RS03930 (DRO_0765) - 782014..782817 (+) 804 WP_010887415.1 hypothetical protein -
  DRO_RS03935 (DRO_0766) pilM 783097..784272 (+) 1176 WP_010887416.1 type IV pilus biogenesis protein PilM Machinery gene
  DRO_RS03940 (DRO_0767) - 784265..784981 (+) 717 WP_010887417.1 hypothetical protein -
  DRO_RS03945 (DRO_0768) - 784978..785637 (+) 660 WP_010887418.1 type 4a pilus biogenesis protein PilO -
  DRO_RS03950 (DRO_0769) - 785634..787541 (+) 1908 WP_010887419.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 42173.15 Da        Isoelectric Point: 4.6785

>NTDB_id=461012 DRO_RS03935 WP_010887416.1 783097..784272(+) (pilM) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
MTSLINRFRSRSAAIGVEIGTSTIKVVALKAGAPPSLQHAVMVPTPIGSMRDGLVVEPQAVASELKSLLAEHRITTRHAV
TAVPNQVAVTRNIMVPRMDRKDLQSAIRWEAERYIPYPIDEVTLDFDLLDDPANVPEDGQMEVVIAAAPTEAVHRQIEVL
RLAGLEPTVVDLKSFAALRALRGNLLGEHLTKSTLTGTNYTEAGEVALVMEIGASSSVINLVRGDRILMTRNINVSADDF
TTALQKAFDLDFAAAEDVKLGYATATTPTEDEEDLLNFDLSREQYSPARVFEVVRPVLGDLITEIRRSLEFYRVQSGDVV
IDRTFLAGGGAKLRGLAAAIGDALGFGVEVASPWLTVQTDQAGVDTGYLQTNAPEFTVPLGLALRGVMGRG

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=461012 DRO_RS03935 WP_010887416.1 783097..784272(+) (pilM) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain R1]
ATGACGAGCCTCATTAACCGTTTTCGCAGTCGTTCCGCCGCCATCGGCGTGGAGATCGGCACCAGCACCATCAAGGTGGT
GGCCCTTAAGGCAGGGGCCCCGCCTTCCCTGCAACACGCGGTGATGGTCCCCACCCCCATCGGCAGCATGCGTGACGGTC
TGGTCGTCGAACCCCAGGCAGTGGCGAGCGAACTCAAAAGCCTGCTGGCCGAGCACCGCATCACCACCCGCCACGCCGTC
ACCGCCGTGCCCAATCAGGTGGCCGTGACCCGCAACATCATGGTGCCGCGCATGGACCGCAAGGACCTGCAAAGCGCCAT
TCGCTGGGAAGCCGAGCGCTACATCCCTTACCCCATCGACGAGGTCACGCTCGACTTCGACCTGCTCGACGACCCCGCCA
ACGTGCCCGAGGACGGGCAGATGGAAGTGGTCATCGCGGCGGCGCCCACCGAGGCCGTGCACCGTCAGATCGAGGTGCTG
CGCCTCGCGGGCCTCGAACCCACCGTGGTGGACCTCAAGAGCTTCGCGGCGCTGCGGGCGCTACGCGGCAACCTGCTCGG
CGAGCACCTCACCAAGAGCACCCTAACCGGCACCAACTACACCGAGGCCGGCGAGGTGGCGCTGGTGATGGAAATCGGCG
CGAGCAGCAGCGTCATCAATCTGGTGCGCGGCGACCGCATCCTGATGACCCGCAACATCAACGTGTCCGCCGACGATTTC
ACCACTGCGCTGCAAAAGGCCTTCGACCTCGACTTTGCCGCCGCCGAGGATGTCAAGCTCGGTTACGCCACCGCCACCAC
CCCCACCGAGGACGAGGAAGACCTGCTCAACTTCGACCTCAGCCGCGAGCAGTACAGCCCGGCGCGCGTGTTCGAAGTGG
TGCGCCCGGTGCTCGGCGACCTGATCACCGAAATCCGCCGCTCGCTGGAGTTCTACCGCGTGCAGAGCGGCGACGTGGTC
ATCGACCGGACCTTCCTCGCCGGGGGCGGCGCCAAGCTGCGCGGCCTGGCGGCGGCCATCGGGGACGCGCTGGGCTTCGG
GGTCGAAGTCGCGTCGCCCTGGCTGACGGTGCAGACCGACCAGGCGGGCGTGGACACCGGCTACCTCCAGACCAACGCCC
CCGAATTCACCGTGCCGCTGGGACTGGCGCTGCGGGGGGTGATGGGCCGTGGTTGA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(16-260)

Type IV pilus assembly protein PilM; (PilM_2)

(291-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RW99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Thermus thermophilus HB27

46.512

98.977

0.46