Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JM964_RS09845 Genome accession   NZ_CP068708
Coordinates   2057191..2058477 (+) Length   428 a.a.
NCBI ID   WP_044674653.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2052191..2063477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS09815 (JM964_09815) - 2052573..2053289 (-) 717 WP_024401046.1 DUF554 domain-containing protein -
  JM964_RS09820 (JM964_09820) - 2053293..2054039 (-) 747 WP_024401045.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  JM964_RS09825 (JM964_09825) prmA 2054041..2054994 (-) 954 WP_024401044.1 50S ribosomal protein L11 methyltransferase -
  JM964_RS10335 - 2055208..2055312 (+) 105 WP_221737275.1 putative holin-like toxin -
  JM964_RS09830 (JM964_09830) - 2055466..2055819 (-) 354 WP_044671419.1 ASCH domain-containing protein -
  JM964_RS09835 (JM964_09835) - 2055821..2056291 (-) 471 WP_024401042.1 DUF3013 family protein -
  JM964_RS09840 (JM964_09840) - 2056361..2057179 (+) 819 WP_044674655.1 GIY-YIG nuclease family protein -
  JM964_RS09845 (JM964_09845) rarA 2057191..2058477 (+) 1287 WP_044674653.1 replication-associated recombination protein A Machinery gene
  JM964_RS09860 (JM964_09860) nrdG 2058958..2059515 (-) 558 WP_044674652.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  JM964_RS09865 (JM964_09865) - 2059702..2060196 (-) 495 WP_044674651.1 GNAT family N-acetyltransferase -
  JM964_RS09870 (JM964_09870) - 2060198..2060404 (-) 207 WP_044674650.1 hypothetical protein -
  JM964_RS09875 (JM964_09875) - 2060386..2060553 (-) 168 WP_153596802.1 hypothetical protein -
  JM964_RS10360 - 2060555..2060689 (-) 135 WP_014638808.1 hypothetical protein -
  JM964_RS09880 (JM964_09880) nrdD 2060782..2062953 (-) 2172 WP_044674647.1 anaerobic ribonucleoside-triphosphate reductase -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47373.93 Da        Isoelectric Point: 6.2932

>NTDB_id=460925 JM964_RS09845 WP_044674653.1 2057191..2058477(+) (rarA) [Streptococcus suis strain ID33329]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDTERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
VDLALSPKSNSAYQAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLNADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=460925 JM964_RS09845 WP_044674653.1 2057191..2058477(+) (rarA) [Streptococcus suis strain ID33329]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCAAAATCCATTGATGAAGTCATCGGTCAGGAACACCTGGTCGGCCCTGG
AAAGATTATCCGTCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCGGGGATTGGCAAAACCT
CGATCGCGTCCGCCATTGCTGGTACGACCAAGTATGCCTTTAGGACCTTTAATGCCACGACGGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCCAAGTTTTCTGGTGGTCTGGTCCTCATGCTCGATGAAATCCACCGCCTCAACAAGACCAA
ACAGGACTTTCTGCTTCCTCTTTTGGAAAATGGCAATATCATCATGATTGGGGCAACGACTGAAAATCCCTTCTTCTCAA
TTTTGCCTGCCATTCGCAGTCGGGTGCAGATTTTTGAATTGCAGCCTTTGCAAACCAGCCACATCCGACAGGCCTTGGAA
CTGGCTCTAACAGACACCGAACGTGGTTTTGACTTCCCCATTACCATTGAGCCTGAGGCTCTGGACTTCCTAGCCAATGC
TACCAACGGTGACCTGCGTGCCGCCTATAATTCGCTAGAACTGGCTGTGCTTTCGACCAAAGAAAGCGACGACGGTAGCC
GCCATATTGACCTAGACGCCGTGGAAAATAGCCTACAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCAGCCCTGCAAAAATCCATTCGAGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
AGCGGAAGACCTGCCTAGCCTGGCCCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCAC
AGATTCATACGGTGACGGCCCTTGAAGCGGCCCAGAAAATCGGCTTTCCAGAGGCTCGCATTTTAATTGCCAATGTGGTA
GTCGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCAGGCCATGGATGCAGCTCTGGCTGATTTGCGGAAAAACGG
TCATCTGCCTATCCCAAATCACCTGCGGGACGGCCATTATGCTGGTAGTAAGGAGCTGGGAAATGCTATTGGCTACCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTGGACCAACAATACCTGCCCGATAAGTTACTGAATGCGGACTACTTCACCGCC
AACGACACCGGCAAATACGAGCGTGCCTTGGGTATGACCCAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

97.664

0.579