Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   JM964_RS07200 Genome accession   NZ_CP068708
Coordinates   1476585..1477319 (-) Length   244 a.a.
NCBI ID   WP_014637571.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471585..1482319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS07185 (JM964_07185) - 1472574..1472933 (-) 360 WP_044670609.1 hypothetical protein -
  JM964_RS07190 (JM964_07190) - 1473095..1475260 (-) 2166 WP_202847508.1 YSIRK-type signal peptide-containing protein -
  JM964_RS07195 (JM964_07195) - 1475503..1476351 (-) 849 WP_024380045.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  JM964_RS07200 (JM964_07200) amiE 1476585..1477319 (-) 735 WP_014637571.1 amino acid ABC transporter ATP-binding protein Regulator
  JM964_RS07205 (JM964_07205) - 1477312..1478001 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  JM964_RS07210 (JM964_07210) - 1478127..1478357 (-) 231 WP_002938704.1 DUF1797 family protein -
  JM964_RS07215 (JM964_07215) clpE 1478581..1480809 (+) 2229 WP_202847509.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  JM964_RS07220 (JM964_07220) - 1480995..1481456 (+) 462 WP_002938708.1 NUDIX hydrolase -
  JM964_RS07225 (JM964_07225) - 1481511..1481819 (+) 309 WP_002938710.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26908.18 Da        Isoelectric Point: 4.8166

>NTDB_id=460901 JM964_RS07200 WP_014637571.1 1476585..1477319(-) (amiE) [Streptococcus suis strain ID33329]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVKFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=460901 JM964_RS07200 WP_014637571.1 1476585..1477319(-) (amiE) [Streptococcus suis strain ID33329]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTAAATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCAAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAAGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAACGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACTAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365