Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JM964_RS04570 Genome accession   NZ_CP068708
Coordinates   941412..943181 (+) Length   589 a.a.
NCBI ID   WP_202847690.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 936412..948181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS04535 (JM964_04535) - 936694..937482 (+) 789 WP_202847721.1 class I SAM-dependent methyltransferase -
  JM964_RS04540 (JM964_04540) pcp 937457..938104 (+) 648 WP_202847686.1 pyroglutamyl-peptidase I -
  JM964_RS04545 (JM964_04545) - 938104..938412 (+) 309 WP_202847687.1 DUF4298 domain-containing protein -
  JM964_RS04550 (JM964_04550) - 938425..938808 (+) 384 WP_202847688.1 YybH family protein -
  JM964_RS04555 (JM964_04555) rpsP 938937..939209 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  JM964_RS04560 (JM964_04560) - 939231..939473 (+) 243 WP_002940680.1 KH domain-containing protein -
  JM964_RS04565 (JM964_04565) rcrP 939667..941403 (+) 1737 WP_202847689.1 ABC transporter ATP-binding protein Regulator
  JM964_RS04570 (JM964_04570) rcrQ 941412..943181 (+) 1770 WP_202847690.1 ABC transporter ATP-binding protein Regulator
  JM964_RS04575 (JM964_04575) - 943238..944161 (-) 924 WP_044679604.1 polysaccharide deacetylase family protein -
  JM964_RS04580 (JM964_04580) - 944266..945552 (+) 1287 WP_002940676.1 homoserine dehydrogenase -
  JM964_RS04585 (JM964_04585) thrB 945556..946416 (+) 861 WP_044679603.1 homoserine kinase -
  JM964_RS04590 (JM964_04590) murB 946652..947560 (+) 909 WP_024402209.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65803.81 Da        Isoelectric Point: 5.2702

>NTDB_id=460885 JM964_RS04570 WP_202847690.1 941412..943181(+) (rcrQ) [Streptococcus suis strain ID33329]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGAEGAQINYSYIAIMLAIYALR
ALMYEIGAYGSNFFMTKAVQGAIKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFENVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=460885 JM964_RS04570 WP_202847690.1 941412..943181(+) (rcrQ) [Streptococcus suis strain ID33329]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTATTGGGGCTTATCATCACAGAATTGACCAAGAATCTGT
TGGACATGGCAAATGGAGCAGAAGGAGCGCAGATTAACTATTCTTACATTGCCATCATGCTTGCCATTTATGCCCTTCGT
GCTCTGATGTATGAAATCGGTGCTTATGGTTCTAACTTTTTTATGACCAAGGCAGTGCAGGGGGCGATCAAGGAACTACG
TCAGGATTTAAGCCACAAGATTAACAAAATTCCTGTTTCTTACTTTGATAAGCACCAGTATGGTGACTTGCTGGGGCGAT
TTACCAGCGATGTAGAAACGGTTTCAAATGCTCTACAGCAAAGTTTTCTTCAGTTGGTTAATGCTGTCTTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTGTCATTAGCTCTCGTAGTCGTGACCTTGGTTCCAGTGACTTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCTCAACCCTATTTCAAACAACAGGCGGATGCACTTGGTCGATTGAATGGCTTTGTCC
AAGAAAATCTCACAGGCTTCAACGTCCTCAAGCTCTACGGTCGTGAAGAAATTTCTACAGAAGAATTTCGCCAGATAACT
GCCGACTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTTATGCCTCTGGTTCATGGCTTGTCAAATAT
CGCCTATGTCGTCGTTGCCCTGTTATCTGGATTGAAAGTTCTTGCAGGTACATTGACAGTAGGTAACATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACTCAGTTGGCACCACAGTTGCAGTCTGCCAAATCCTCC
CTTGAACGCATCTTTTCAGTCCTAGACGAGCTTGATGAAGAAGACGCCAATGCGCTAGAGTTGACAGAAAGTCTGACAGG
ACAAGTTAGCTTCGAAAATGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTAGATGTTCAAC
CAGGTGAAATGGTGGCCATTGTTGGTCCAACAGGGGCAGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCCGGTGCTATCAAGGTGGATGGCCAGGACATTCGTAATATTTCCCGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTACGAAGGGACCATAAAGGAAAACCTGCGTTTTGGACGCCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGAACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.508

100

0.438