Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   JM964_RS01085 Genome accession   NZ_CP068708
Coordinates   193227..195716 (-) Length   829 a.a.
NCBI ID   WP_202847598.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 188227..200716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS01060 (JM964_01060) dinB 189069..190163 (+) 1095 WP_202847595.1 DNA polymerase IV -
  JM964_RS01065 (JM964_01065) - 190147..190566 (+) 420 WP_172028317.1 Rrf2 family transcriptional regulator -
  JM964_RS01070 (JM964_01070) - 190702..191328 (+) 627 WP_202847596.1 NAD(P)-dependent oxidoreductase -
  JM964_RS01075 (JM964_01075) - 191430..192350 (+) 921 WP_202847597.1 1-phosphofructokinase family hexose kinase -
  JM964_RS01080 (JM964_01080) - 192398..193036 (+) 639 WP_014636205.1 endonuclease III domain-containing protein -
  JM964_RS01085 (JM964_01085) recD/recD2/recDB 193227..195716 (-) 2490 WP_202847598.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JM964_RS01090 (JM964_01090) lepB 195780..196409 (-) 630 WP_024411908.1 signal peptidase I -
  JM964_RS01095 (JM964_01095) rnhC 196419..197309 (-) 891 WP_044673704.1 ribonuclease HIII -
  JM964_RS01100 (JM964_01100) - 197394..198377 (+) 984 WP_202847599.1 Gfo/Idh/MocA family protein -
  JM964_RS01105 (JM964_01105) - 198922..200479 (+) 1558 Protein_188 IS1182 family transposase -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 92987.33 Da        Isoelectric Point: 4.5797

>NTDB_id=460856 JM964_RS01085 WP_202847598.1 193227..195716(-) (recD/recD2/recDB) [Streptococcus suis strain ID33329]
MNEVYVTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIIELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELETMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLEADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAEQDSKEALAEKAESKTAATVQTQPPTQPNRKKQAEVVKENNQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=460856 JM964_RS01085 WP_202847598.1 193227..195716(-) (recD/recD2/recDB) [Streptococcus suis strain ID33329]
ATGAACGAAGTGTATGTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CATTGAACTCTATGGTGAAGATACCATTGATAAGATTTTGGCCGAGCCTGAAAAACTGACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTGGAGAAACTCCGCCTCAATTATGGAACGGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAATCTAGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGTATGCTCTTTAGTCTCATTCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACTCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGCCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAACTATGTCTTCCCTGACCTACGATGACATTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCCGACGGATG
AATGAATTGACAGGTCTGCCTTCTGCCACCATCCACCGCCACCTCGGTCTAGTAGAAGGACAGGAAGAATCCTACCGTGA
TGATTACCTCGAAGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCATCCCAGACCCAAGTTCTGATTGTCGGCGATGCAGAGCAATTACCTTCTGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCCTGAAAATTGACAAGCTACCCAGCATCACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTCAC
CCTAGCCAGCCAGATTCGCCAAGGAGCTCTGCCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCTATCAAGTCAGGTATTCCTGCAAACGAAGTACAA
ATCCTCGCTCCCATGTACCGTGGGGCCGCAGGCATTGACCAACTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCATAACGAGCAAGCCTTCCGCCAAGGGGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGCGACTTGGGCTACATCACCGACCTCCTACCGGCCAAGTACACCGACTCCAAACAGGATGAA
ATCACCATCAACTTCGACGGTAGCGAGGTCACCTATCCACGCAATGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTCGTCATCCTTCCCATCACGCGCACCAGCCACCGCATGCTCCAGCGCA
ACCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTCGACTATGCCGTC
AAAAACGCCGGAACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGATAGCAAGGAAGC
TTTAGCTGAAAAAGCCGAAAGTAAAACAGCGGCAACCGTCCAAACCCAGCCCCCTACACAGCCAAACAGGAAAAAACAGG
CTGAAGTAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGACAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-529)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.711

91.677

0.382