Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JKV48_RS09535 Genome accession   NZ_CP068682
Coordinates   1944505..1945278 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain NCCP11854     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939505..1950278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV48_RS09500 (JKV48_09445) - 1939758..1940528 (-) 771 WP_235103075.1 isoprenyl transferase -
  JKV48_RS09505 (JKV48_09450) frr 1940901..1941455 (-) 555 WP_235103076.1 ribosome recycling factor -
  JKV48_RS09510 (JKV48_09455) pyrH 1941474..1942196 (-) 723 WP_000057330.1 UMP kinase -
  JKV48_RS09515 (JKV48_09460) tsf 1942333..1943214 (-) 882 WP_000201386.1 translation elongation factor Ts -
  JKV48_RS09520 (JKV48_09465) - 1943249..1943362 (-) 114 WP_031845108.1 hypothetical protein -
  JKV48_RS09525 (JKV48_09470) rpsB 1943396..1944163 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  JKV48_RS09530 (JKV48_09475) - 1944362..1944454 (-) 93 WP_031788481.1 hypothetical protein -
  JKV48_RS09535 (JKV48_09480) codY 1944505..1945278 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JKV48_RS09540 (JKV48_09485) hslU 1945303..1946706 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  JKV48_RS09545 (JKV48_09490) hslV 1946772..1947317 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  JKV48_RS09550 (JKV48_09495) xerC 1947314..1948210 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  JKV48_RS09555 (JKV48_09500) trmFO 1948628..1949935 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=460725 JKV48_RS09535 WP_000055337.1 1944505..1945278(-) (codY) [Staphylococcus aureus strain NCCP11854]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=460725 JKV48_RS09535 WP_000055337.1 1944505..1945278(-) (codY) [Staphylococcus aureus strain NCCP11854]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428