Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JKV48_RS07610 Genome accession   NZ_CP068682
Coordinates   1532001..1533275 (-) Length   424 a.a.
NCBI ID   WP_000102738.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP11854     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1527001..1538275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKV48_RS07585 (JKV48_07540) hisS 1527561..1528823 (+) 1263 WP_000590822.1 histidine--tRNA ligase -
  JKV48_RS07590 (JKV48_07545) aspS 1528839..1530605 (+) 1767 WP_000044807.1 aspartate--tRNA ligase -
  JKV48_RS07600 (JKV48_07555) - 1530938..1531066 (+) 129 WP_031845039.1 hypothetical protein -
  JKV48_RS07605 (JKV48_07560) - 1531066..1531839 (+) 774 WP_000682646.1 ThiF family adenylyltransferase -
  JKV48_RS07610 (JKV48_07565) rarA 1532001..1533275 (-) 1275 WP_000102738.1 replication-associated recombination protein A Machinery gene
  JKV48_RS07615 (JKV48_07570) cymR 1533360..1533782 (+) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  JKV48_RS07620 (JKV48_07575) - 1533882..1534064 (+) 183 WP_000752909.1 CsbD family protein -
  JKV48_RS07625 (JKV48_07580) - 1534104..1534250 (+) 147 WP_000009238.1 SAS049 family protein -
  JKV48_RS07630 (JKV48_07585) - 1534487..1535500 (-) 1014 WP_000985896.1 LLM class flavin-dependent oxidoreductase -
  JKV48_RS07635 (JKV48_07590) - 1535812..1536954 (+) 1143 WP_000409170.1 cysteine desulfurase family protein -
  JKV48_RS07640 (JKV48_07595) mnmA 1536955..1538073 (+) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47234.81 Da        Isoelectric Point: 8.3539

>NTDB_id=460701 JKV48_RS07610 WP_000102738.1 1532001..1533275(-) (rarA) [Staphylococcus aureus strain NCCP11854]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=460701 JKV48_RS07610 WP_000102738.1 1532001..1533275(-) (rarA) [Staphylococcus aureus strain NCCP11854]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGTCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAAGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686