Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LILO_RS01180 Genome accession   NC_020450
Coordinates   233319..235196 (+) Length   625 a.a.
NCBI ID   WP_015425739.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 228319..240196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS01160 (lilo_0214) - 228509..229786 (-) 1278 WP_015425735.1 NAD(P)/FAD-dependent oxidoreductase -
  LILO_RS01165 (lilo_0215) - 229927..230754 (+) 828 WP_015425736.1 NAD(P)H-hydrate dehydratase -
  LILO_RS01170 (lilo_0216) - 230903..231316 (+) 414 WP_015425737.1 DUF1398 domain-containing protein -
  LILO_RS01175 (lilo_0217) - 231487..233322 (+) 1836 WP_015425738.1 ABC transporter ATP-binding protein -
  LILO_RS01180 (lilo_0218) rcrQ 233319..235196 (+) 1878 WP_015425739.1 ABC transporter ATP-binding protein Regulator
  LILO_RS01185 (lilo_0219) - 235292..235945 (+) 654 WP_015425740.1 YcjF family protein -
  LILO_RS01190 (lilo_0220) - 235991..237010 (-) 1020 WP_042230025.1 Gfo/Idh/MocA family oxidoreductase -
  LILO_RS12060 - 236994..237161 (-) 168 WP_003131184.1 hypothetical protein -
  LILO_RS01195 (lilo_0221) - 237348..237824 (-) 477 WP_015425742.1 S-ribosylhomocysteine lyase -
  LILO_RS01200 (lilo_0222) - 238038..238502 (+) 465 WP_015425743.1 GyrI-like domain-containing protein -
  LILO_RS01205 (lilo_0223) - 238567..239412 (+) 846 WP_003131189.1 aldo/keto reductase -
  LILO_RS01210 (lilo_0224) - 239578..240090 (+) 513 WP_023189990.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70285.14 Da        Isoelectric Point: 8.7506

>NTDB_id=46059 LILO_RS01180 WP_015425739.1 233319..235196(+) (rcrQ) [Lactococcus lactis subsp. lactis IO-1]
MMRGNYLNRGGKGADRFQKGRRAQNFFPTIIRLFKYMRRDLWGLLFSILIASLSVILSVQAPKILGNATTVIFDGVTKSL
KNHTAIQIDMAKVESILLYVMVIYLISFISGILQQSIMTRISQRTVYTLRREFKNKMKKLPVSYYDSHSNGDIMSRMIND
MDNISGTLNQTLIQLITSLLQFVGTIYFMLTISWQLALVAFITVPLAMITVRIVAPLSQKFFAEQQKNLGLLNDQIEENY
AGHTVIKTFNHEASAEKEFAKRNDNFYKSAWKAQFVSTLIYPTMRFINNLDYLAMAVIGGLKVISGTVNLGDVQAMLQYT
NQFAQPITNISNMLNTIQATVASAERIFEVLDEKEMTDGIPVSEKVADESSKKAVSNLGATDKTDFINFDQVAFSYNENQ
SLMTDVNFSVEVGQMIAIVGPTGAGKTTMINLLERFYDVTSGKILLEGKDIREIDREQLRGRMAMVLQETWLFSGTIMDN
LQYGRLEATQEEVIQAAKMAHADEFITTLPQGYQTLLNEAASNISQGQRQLLTIARAFLANPEILILDEATSSVDTRTER
LIQSAMNRLLKGRTSFVVAHRLSTIRDANQILVMENGNIVEMGNHESLLKENGLYASLYNSQFAK

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=46059 LILO_RS01180 WP_015425739.1 233319..235196(+) (rcrQ) [Lactococcus lactis subsp. lactis IO-1]
ATGATGAGAGGAAATTATCTCAATCGAGGTGGCAAAGGGGCTGATCGTTTTCAAAAAGGTCGGCGAGCTCAAAATTTCTT
TCCAACGATTATTCGACTTTTCAAATATATGCGCAGAGATTTATGGGGACTCCTTTTTTCAATTTTAATTGCTTCGCTGT
CAGTCATTTTGTCGGTTCAGGCACCCAAAATTTTGGGAAATGCAACCACAGTGATATTTGATGGCGTAACAAAAAGTCTA
AAAAATCATACCGCAATTCAAATTGACATGGCTAAGGTCGAATCTATTTTGCTTTATGTCATGGTCATTTATCTGATTTC
ATTTATCTCTGGGATTTTGCAACAAAGCATTATGACACGCATTTCGCAACGAACAGTTTATACTTTACGTCGTGAATTTA
AAAACAAAATGAAAAAATTGCCAGTTTCATATTATGATAGCCATAGTAATGGGGATATCATGAGTCGAATGATAAATGAT
ATGGATAATATTTCAGGGACTTTAAATCAAACTTTGATTCAGCTTATCACAAGTCTCTTGCAATTTGTTGGAACTATTTA
TTTCATGTTGACCATTTCTTGGCAGTTGGCACTTGTTGCCTTTATCACAGTTCCTTTGGCAATGATTACGGTAAGGATTG
TTGCACCTTTATCTCAAAAATTCTTTGCTGAACAACAAAAAAATCTGGGATTATTGAATGACCAAATTGAAGAAAATTAT
GCAGGGCATACGGTCATTAAAACATTCAATCATGAAGCCTCAGCTGAAAAAGAATTCGCAAAAAGAAATGATAATTTTTA
TAAATCAGCTTGGAAAGCTCAATTTGTATCGACTTTGATTTATCCAACCATGCGATTTATCAATAATTTAGATTACTTAG
CCATGGCCGTAATTGGTGGTCTTAAGGTTATTTCAGGGACGGTTAATCTCGGAGATGTTCAAGCCATGTTGCAATATACC
AATCAATTTGCACAGCCAATCACAAATATCTCGAATATGCTCAACACCATTCAGGCTACAGTTGCGTCAGCCGAACGAAT
TTTTGAAGTATTAGATGAAAAAGAAATGACTGACGGAATTCCTGTCAGTGAAAAAGTTGCTGACGAAAGTTCAAAAAAAG
CTGTCAGTAATTTAGGAGCGACTGACAAGACTGATTTCATCAATTTTGACCAAGTCGCATTTTCTTATAATGAAAATCAA
TCCTTAATGACAGATGTTAATTTTTCTGTTGAAGTTGGGCAAATGATTGCCATTGTGGGACCAACTGGAGCAGGTAAAAC
AACAATGATTAACTTGCTCGAACGATTTTACGATGTCACTTCGGGAAAAATTTTACTTGAAGGAAAAGACATTCGCGAAA
TTGACCGTGAACAATTACGTGGACGAATGGCAATGGTTTTACAAGAAACCTGGTTGTTCTCAGGGACAATTATGGATAAT
TTACAGTATGGTCGTCTTGAAGCAACACAAGAAGAAGTGATTCAAGCAGCTAAAATGGCACATGCTGATGAATTTATCAC
CACTTTACCTCAAGGTTATCAAACCCTTTTGAATGAAGCCGCAAGCAATATTTCTCAGGGGCAAAGGCAGTTATTAACCA
TCGCCCGTGCCTTTTTAGCAAATCCAGAAATATTGATTTTGGATGAAGCCACGTCCAGTGTAGATACAAGAACGGAGCGC
CTGATTCAATCAGCGATGAATCGTCTATTAAAAGGACGGACAAGCTTTGTCGTTGCTCACCGTTTATCTACTATTCGTGA
TGCCAATCAGATTTTGGTTATGGAAAATGGAAATATTGTGGAAATGGGGAACCATGAAAGTCTCCTTAAAGAAAATGGAT
TATATGCTAGCCTTTATAATTCACAATTTGCAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(404-552)

ABC transporter transmembrane region (ABC_membrane)

(44-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.809

94.88

0.387

Multiple sequence alignment