Detailed information NTG0460423

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: JHS88_RS05365
• Genome accession: NZ_CP068647
• Coordinates: 1152029..1153318 (+)
• Length: 429 a.a.
• NCBI ID: WP_269062885.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain TJ-187
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1147029..1158318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS88_RS05350 (JHS88_05345)	lrp	1147522..1148016 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
JHS88_RS05355 (JHS88_05350)	-	1148169..1151261 (+)	3093	WP_140391984.1	DNA translocase FtsK	-
JHS88_RS05360 (JHS88_05355)	lolA	1151336..1151962 (+)	627	WP_140391985.1	outer membrane lipoprotein chaperone LolA	-
JHS88_RS05365 (JHS88_05360)	rarA	1152029..1153318 (+)	1290	WP_269062885.1	replication-associated recombination protein A	Machinery gene
JHS88_RS05370 (JHS88_05365)	serS	1153410..1154717 (+)	1308	WP_140391987.1	serine--tRNA ligase	-
JHS88_RS05375 (JHS88_05370)	-	1155087..1155653 (+)	567	WP_021453009.1	hypothetical protein	-
JHS88_RS25710	-	1155647..1156087 (+)	441	WP_140391988.1	hypothetical protein	-
JHS88_RS05385 (JHS88_05375)	-	1156222..1156488 (+)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
JHS88_RS05390 (JHS88_05380)	bioA	1156558..1157838 (-)	1281	WP_020903988.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47578.78 Da
• Isoelectric Point: 5.8532

>NTDB_id=460423 JHS88_RS05365 WP_269062885.1 1152029..1153318(+) (rarA) [Vibrio parahaemolyticus strain TJ-187]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFVDNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPVYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=460423 JHS88_RS05365 WP_269062885.1 1152029..1153318(+) (rarA) [Vibrio parahaemolyticus strain TJ-187]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGTTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCAGTTTACATTGCCCGCCGGTTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCGATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCAGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (171-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385