Detailed information NTG0460338

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: JHS79_RS05520
• Genome accession: NZ_CP068641
• Coordinates: 1217130..1218419 (+)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain VP157
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1212130..1223419

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS79_RS05505 (JHS79_05490)	lrp	1212629..1213123 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
JHS79_RS05510 (JHS79_05495)	-	1213276..1216362 (+)	3087	WP_140125567.1	DNA translocase FtsK	-
JHS79_RS05515 (JHS79_05500)	lolA	1216437..1217063 (+)	627	WP_023585423.1	outer membrane lipoprotein chaperone LolA	-
JHS79_RS05520 (JHS79_05505)	rarA	1217130..1218419 (+)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
JHS79_RS05525 (JHS79_05510)	serS	1218511..1219818 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
JHS79_RS05530 (JHS79_05515)	-	1220188..1220754 (+)	567	WP_226056634.1	ATPase	-
JHS79_RS05535 (JHS79_05520)	-	1220748..1221188 (+)	441	WP_140079877.1	hypothetical protein	-
JHS79_RS05540 (JHS79_05525)	-	1221323..1221589 (+)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
JHS79_RS05545 (JHS79_05530)	bioA	1221659..1222939 (-)	1281	WP_045546140.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=460338 JHS79_RS05520 WP_021447448.1 1217130..1218419(+) (rarA) [Vibrio parahaemolyticus strain VP157]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=460338 JHS79_RS05520 WP_021447448.1 1217130..1218419(+) (rarA) [Vibrio parahaemolyticus strain VP157]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGGTTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCGATGCAAG
TTGCTCTTTCCGCGTGGGACTGCTTTACACGCGTTGGTCCAGCTGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCTGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGCCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385