Detailed information NTG0460248

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: JHT21_RS05205
• Genome accession: NZ_CP068638
• Coordinates: 1117610..1118899 (+)
• Length: 429 a.a.
• NCBI ID: WP_043043278.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain VP120
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1112610..1123899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHT21_RS05190 (JHT21_05195)	lrp	1113109..1113603 (+)	495	WP_047022953.1	leucine-responsive transcriptional regulator Lrp	-
JHT21_RS05195 (JHT21_05200)	-	1113756..1116842 (+)	3087	WP_029805929.1	DNA translocase FtsK	-
JHT21_RS05200 (JHT21_05205)	lolA	1116917..1117543 (+)	627	WP_029805927.1	outer membrane lipoprotein chaperone LolA	-
JHT21_RS05205 (JHT21_05210)	rarA	1117610..1118899 (+)	1290	WP_043043278.1	replication-associated recombination protein A	Machinery gene
JHT21_RS05210 (JHT21_05215)	serS	1118991..1120298 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
JHT21_RS05215 (JHT21_05220)	-	1120668..1121234 (+)	567	WP_225868813.1	ATPase	-
JHT21_RS24285	-	1121228..1121668 (+)	441	Protein_993	hypothetical protein	-
JHT21_RS05225 (JHT21_05225)	-	1121803..1122069 (+)	267	WP_015296513.1	DksA/TraR family C4-type zinc finger protein	-
JHT21_RS05230 (JHT21_05230)	bioA	1122139..1123419 (-)	1281	WP_029845746.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47621.81 Da
• Isoelectric Point: 5.8544

>NTDB_id=460248 JHT21_RS05205 WP_043043278.1 1117610..1118899(+) (rarA) [Vibrio parahaemolyticus strain VP120]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGNTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEENDQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=460248 JHT21_RS05205 WP_043043278.1 1117610..1118899(+) (rarA) [Vibrio parahaemolyticus strain VP120]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGTCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGGCTGGGCAATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
TGATGCTCGCATGTCTCTTAACTACCTTGAGCTTCTCTACGATATGGCAGAAGAGAATGATCAAGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGCCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGTGTTGGTCCAGCAGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (169-248)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385