Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JHT21_RS00675 Genome accession   NZ_CP068638
Coordinates   148744..149469 (-) Length   241 a.a.
NCBI ID   WP_029806006.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP120     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143744..154469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT21_RS00650 (JHT21_00655) - 144862..145353 (+) 492 WP_005458943.1 type II secretion system protein M -
  JHT21_RS00655 (JHT21_00660) - 145355..146116 (+) 762 WP_021822200.1 type II secretion system protein N -
  JHT21_RS00660 (JHT21_00665) cysQ 146403..147230 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  JHT21_RS00665 (JHT21_00670) nudE 147272..147841 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  JHT21_RS00670 (JHT21_00675) nfuA 148062..148646 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  JHT21_RS00675 (JHT21_00680) comF 148744..149469 (-) 726 WP_029806006.1 amidophosphoribosyltransferase Machinery gene
  JHT21_RS00680 (JHT21_00685) bioH 149554..150321 (+) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  JHT21_RS00685 (JHT21_00690) - 150445..150909 (+) 465 WP_005459035.1 hypothetical protein -
  JHT21_RS00690 (JHT21_00695) - 151045..153366 (-) 2322 WP_029806004.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27663.84 Da        Isoelectric Point: 8.9991

>NTDB_id=460223 JHT21_RS00675 WP_029806006.1 148744..149469(-) (comF) [Vibrio parahaemolyticus strain VP120]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=460223 JHT21_RS00675 WP_029806006.1 148744..149469(-) (comF) [Vibrio parahaemolyticus strain VP120]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485