Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JHS95_RS15660 Genome accession   NZ_CP068627
Coordinates   3242401..3243126 (+) Length   241 a.a.
NCBI ID   WP_169609445.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3237401..3248126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS15645 (JHS95_15540) - 3238506..3240827 (+) 2322 WP_169609447.1 Tex family protein -
  JHS95_RS15650 (JHS95_15545) - 3240961..3241425 (-) 465 WP_005459035.1 hypothetical protein -
  JHS95_RS15655 (JHS95_15550) bioH 3241549..3242316 (-) 768 WP_069515734.1 pimeloyl-ACP methyl ester esterase BioH -
  JHS95_RS15660 (JHS95_15555) comF 3242401..3243126 (+) 726 WP_169609445.1 ComF family protein Machinery gene
  JHS95_RS15665 (JHS95_15560) nfuA 3243224..3243808 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  JHS95_RS15670 (JHS95_15565) nudE 3244029..3244598 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  JHS95_RS15675 (JHS95_15570) cysQ 3244639..3245466 (+) 828 WP_169609442.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  JHS95_RS15680 (JHS95_15575) - 3245753..3246514 (-) 762 WP_169609440.1 type II secretion system protein N -
  JHS95_RS15685 (JHS95_15580) - 3246516..3247007 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27780.94 Da        Isoelectric Point: 8.8553

>NTDB_id=460192 JHS95_RS15660 WP_169609445.1 3242401..3243126(+) (comF) [Vibrio parahaemolyticus strain LH80]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLADHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKHNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=460192 JHS95_RS15660 WP_169609445.1 3242401..3243126(+) (comF) [Vibrio parahaemolyticus strain LH80]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCCTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGATCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGCATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485