Detailed information NTG0460166

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: JHS95_RS10860
• Genome accession: NZ_CP068627
• Coordinates: 2207986..2209275 (-)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain LH80
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2202986..2214275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHS95_RS10840 (JHS95_10750)	bioB	2203591..2204643 (-)	1053	WP_025516387.1	biotin synthase BioB	-
JHS95_RS10845 (JHS95_10755)	bioA	2204774..2206054 (+)	1281	WP_237301705.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
JHS95_RS10850 (JHS95_10760)	-	2206124..2206390 (-)	267	WP_140061393.1	DksA/TraR family C4-type zinc finger protein	-
JHS95_RS10855 (JHS95_10765)	serS	2206587..2207894 (-)	1308	WP_005495761.1	serine--tRNA ligase	-
JHS95_RS10860 (JHS95_10770)	rarA	2207986..2209275 (-)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
JHS95_RS10865 (JHS95_10775)	lolA	2209342..2209968 (-)	627	WP_140061394.1	outer membrane lipoprotein chaperone LolA	-
JHS95_RS10870 (JHS95_10780)	-	2210043..2213129 (-)	3087	WP_140061395.1	DNA translocase FtsK	-
JHS95_RS10875 (JHS95_10785)	lrp	2213282..2213776 (-)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=460166 JHS95_RS10860 WP_021447448.1 2207986..2209275(-) (rarA) [Vibrio parahaemolyticus strain LH80]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=460166 JHS95_RS10860 WP_021447448.1 2207986..2209275(-) (rarA) [Vibrio parahaemolyticus strain LH80]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGACATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGCGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385