Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JHW37_RS02330 Genome accession   NZ_CP068238
Coordinates   503899..504624 (-) Length   241 a.a.
NCBI ID   WP_053816573.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A39-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498899..509624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS02305 (JHW37_02305) - 499364..499879 (+) 516 WP_053816571.1 glycine cleavage system protein R -
  JHW37_RS02310 (JHW37_02310) rarD 500568..501464 (-) 897 WP_053816572.1 EamA family transporter RarD -
  JHW37_RS02315 (JHW37_02315) - 501675..502649 (-) 975 WP_053813274.1 serine/threonine protein kinase -
  JHW37_RS02320 (JHW37_02320) - 502711..503469 (-) 759 WP_053813275.1 TOBE domain-containing protein -
  JHW37_RS02325 (JHW37_02325) - 503537..503857 (-) 321 WP_034080855.1 YfiM family lipoprotein -
  JHW37_RS02330 (JHW37_02330) comF 503899..504624 (-) 726 WP_053816573.1 ComF family protein Machinery gene
  JHW37_RS02335 (JHW37_02335) - 504763..505056 (-) 294 WP_003157986.1 hypothetical protein -
  JHW37_RS02340 (JHW37_02340) - 505110..506027 (-) 918 WP_003157985.1 LysR family transcriptional regulator -
  JHW37_RS02345 (JHW37_02345) - 506156..506914 (+) 759 WP_003157984.1 5-oxoprolinase subunit PxpA -
  JHW37_RS02350 (JHW37_02350) - 506979..507227 (+) 249 WP_003157983.1 acetyl-CoA carboxylase -
  JHW37_RS02355 (JHW37_02355) - 507238..508611 (+) 1374 WP_043098994.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  JHW37_RS02360 (JHW37_02360) - 508613..509491 (+) 879 WP_034080859.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27125.89 Da        Isoelectric Point: 11.1188

>NTDB_id=459200 JHW37_RS02330 WP_053816573.1 503899..504624(-) (comF) [Pseudomonas aeruginosa strain A39-1]
MSFPLQYLPRWLAPAPACLLCAARSDQPPRPLCRACATELPWSGRQCRRCALSLPLDGQLCGECLRRPPTYEQVIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPVRLLPVPLAPRRERRRGFNQARLLADWLAGELRLRCAP
HLLRRVLDTPAQQGLDAALRRRNLRHAFALAPGKEVRGLHLALVDDVLTTGATAECLARLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=459200 JHW37_RS02330 WP_053816573.1 503899..504624(-) (comF) [Pseudomonas aeruginosa strain A39-1]
ATGTCGTTCCCGCTCCAGTATCTGCCGCGCTGGCTCGCGCCGGCACCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
ACCGCCTCGTCCGCTGTGCCGAGCCTGCGCGACCGAGCTGCCCTGGTCGGGCCGGCAATGCCGGCGCTGCGCCCTGTCCC
TGCCGCTGGACGGGCAGTTGTGCGGCGAGTGCCTGCGCCGCCCACCAACCTATGAGCAGGTAATAGCGCCCTGGCGCTAC
GCCTTCCCGCTGGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGACGGCTGCTCGGCGAACTGCT
GGCGGAGCACCTGCGACAACGCTATGCCGAAGGCCTGCCGCGCCCCGTACGCCTGCTGCCGGTCCCGCTGGCGCCACGCC
GCGAACGTCGCCGCGGCTTCAACCAGGCGCGGTTGCTCGCCGACTGGCTGGCCGGCGAACTACGCCTGCGCTGCGCACCG
CACCTGCTTCGGCGTGTGCTCGACACCCCTGCCCAGCAGGGCCTGGATGCCGCGCTGCGACGGCGCAATCTGCGCCACGC
CTTCGCCCTGGCCCCCGGCAAGGAGGTTCGCGGCCTGCACCTGGCGCTGGTCGACGACGTGCTCACCACCGGCGCCACCG
CCGAATGCCTCGCCCGCCTGTTGCGCCGGGCGGGCGCGGCGCGGGTCGACGTCTATTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.326

94.191

0.361