Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6J13_RS08175 Genome accession   NZ_CP068213
Coordinates   1656962..1659316 (-) Length   784 a.a.
NCBI ID   WP_006270635.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1651962..1664316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS08160 (I6J13_08160) - 1652185..1652961 (-) 777 WP_006270637.1 threonine/serine exporter family protein -
  I6J13_RS08165 (I6J13_08165) pflB 1653062..1655377 (-) 2316 WP_006270642.1 formate C-acetyltransferase -
  I6J13_RS08170 (I6J13_08170) dinB 1655613..1656680 (+) 1068 WP_006270639.1 DNA polymerase IV -
  I6J13_RS08175 (I6J13_08175) recD/recD2/recDB 1656962..1659316 (-) 2355 WP_006270635.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6J13_RS08180 (I6J13_08180) lepB 1659545..1660159 (-) 615 WP_006269005.1 signal peptidase I -
  I6J13_RS08185 (I6J13_08185) rnhC 1660163..1661053 (-) 891 WP_006270627.1 ribonuclease HIII -
  I6J13_RS08190 (I6J13_08190) - 1661139..1661444 (+) 306 WP_003070932.1 hypothetical protein -
  I6J13_RS08195 (I6J13_08195) - 1661441..1661989 (+) 549 WP_006270633.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88616.84 Da        Isoelectric Point: 4.6580

>NTDB_id=459170 I6J13_RS08175 WP_006270635.1 1656962..1659316(-) (recD/recD2/recDB) [Streptococcus constellatus strain FDAARGOS_1156]
MEFYFSGTIERIIFENPSSFFRILLLNIDDTDADFDDFEIIVTGTMADIIEGEDYTFWGNLVQHPKYGEQLKLIRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLHDIVGLSAKNREAFIMKLRQNYGTERVLAKLSEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELAPNSVADELAHLIEEDKVQNVDTKIFENSLFFAEEGICNNLLRILEKENQNKYEPEKIEAAI
TQIEIEFAISYDVIQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLNGLDLRKSHDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPTDFIEKKADRSYFEARSEHIPQMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAEKEQLVFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVQN
TGTTRKTYLKERFEDFLNVEKVIHTSVDNLETTVEKYILTEENFLKINPMIGITDEDIQSVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=459170 I6J13_RS08175 WP_006270635.1 1656962..1659316(-) (recD/recD2/recDB) [Streptococcus constellatus strain FDAARGOS_1156]
ATGGAATTTTACTTTTCAGGTACCATCGAACGTATTATCTTTGAAAATCCCAGCAGTTTTTTTCGGATTCTGTTGCTAAA
TATTGACGACACCGATGCGGATTTTGATGATTTTGAGATTATTGTCACCGGCACTATGGCAGATATTATAGAGGGGGAAG
ACTATACTTTCTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAGCTCAAACTAATACGCTATGAGCGTGCTAAA
CCAACCAGCAAAGGCTTGGTCAAATATTTTTCAAGCGACCATTTTAAAGGAATCGGTGTAAAAACAGCACAAAAAATTGT
GGATCTCTACGGCGATAACACGATTGATAAGGTCTTGGCAGAACCCGAAAAATTACATGATATTGTAGGCCTTTCTGCTA
AAAATCGCGAAGCCTTTATTATGAAACTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATCTGAATACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
ATTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAACCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAGCTTCTGGAACATACGATTGAACTTCTGGAAAGCTCCCGACAGATCGAACTAGCTCCAAATTCTGTTGCAGATGAGCT
AGCTCATTTGATTGAAGAAGATAAAGTCCAAAATGTCGATACGAAGATTTTTGAAAACAGTCTCTTTTTTGCTGAAGAAG
GAATCTGCAACAATCTCTTACGCATTCTGGAGAAGGAAAATCAAAATAAATATGAACCGGAAAAAATCGAAGCTGCTATT
ACCCAAATCGAAATTGAGTTTGCCATTTCCTATGATGTGATTCAAAAACAAGCGATTTGTGACGCTATCAATCACAAAAT
TTTTATCCTAACGGGTGGTCCCGGAACGGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTACGCTCTGCTGAATG
GGTTGGATTTGCGTAAATCTCACGATTTGCCTATCCTGCTAGCAGCTCCGACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCTACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACTAGCCATTTAGACGATTA
TTTGGACGCAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAACATTT
CATCAAACACCAAACTCCTAATTGTCGGAGATGCTGATCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCACAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGATTCCACTATCGTTACCTTAGC
CAGTCAGATTCAAAAAGGCATCCTGCCAACTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCGTAGTG
AACATATTCCGCAGATGATTGAACGTATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTACTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAAAAGA
ACAACTCGTCTTTGAAGCAACGGATTGCCAATACCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAGCA
ATGTGTTCAACGGTGACTTGGGTTATATCACCGATTTGCTGCCAGCAAAATATACGGACTCTAAACAGGACGAATTGACT
ATCAACTTTGACGGCAATGAGATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTAGTCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGCTTTTGCTGTCCAAAAT
ACTGGGACAACACGTAAAACCTATCTGAAAGAGCGCTTTGAAGACTTTCTCAATGTAGAAAAAGTTATACACACTTCTGT
GGATAATTTGGAAACAACTGTGGAAAAATATATCTTGACTGAGGAAAATTTCTTGAAAATCAACCCTATGATTGGAATAA
CGGATGAGGATATTCAAAGTGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

AAA domain (AAA_30)

(333-528)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.184

94.77

0.39