Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6J13_RS05610 Genome accession   NZ_CP068213
Coordinates   1164588..1165859 (+) Length   423 a.a.
NCBI ID   WP_006270043.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1159588..1170859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS05580 (I6J13_05580) - 1160935..1161081 (-) 147 WP_003070706.1 hypothetical protein -
  I6J13_RS05585 (I6J13_05585) - 1161246..1161989 (-) 744 WP_006270023.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  I6J13_RS05590 (I6J13_05590) prmA 1161990..1162943 (-) 954 WP_022524663.1 50S ribosomal protein L11 methyltransferase -
  I6J13_RS05595 (I6J13_05595) - 1163087..1163557 (-) 471 WP_006270018.1 GNAT family N-acetyltransferase -
  I6J13_RS05600 (I6J13_05600) - 1163554..1164006 (-) 453 WP_006270022.1 NUDIX hydrolase -
  I6J13_RS05605 (I6J13_05605) - 1164016..1164486 (-) 471 WP_006270040.1 DUF3013 family protein -
  I6J13_RS05610 (I6J13_05610) rarA 1164588..1165859 (+) 1272 WP_006270043.1 replication-associated recombination protein A Machinery gene
  I6J13_RS05620 (I6J13_05620) - 1166291..1167430 (-) 1140 WP_006270031.1 site-specific integrase -
  I6J13_RS05625 (I6J13_05625) - 1167432..1167557 (-) 126 Protein_1117 DUF3173 family protein -
  I6J13_RS09440 - 1167540..1167806 (-) 267 Protein_1118 replication initiation protein -
  I6J13_RS05630 (I6J13_05630) - 1167836..1168017 (-) 182 Protein_1119 hypothetical protein -
  I6J13_RS05635 (I6J13_05635) - 1168227..1168736 (+) 510 WP_006270039.1 helix-turn-helix domain-containing protein -
  I6J13_RS05640 (I6J13_05640) - 1168852..1169997 (+) 1146 WP_006270025.1 low temperature requirement protein A -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46646.03 Da        Isoelectric Point: 6.4248

>NTDB_id=459133 I6J13_RS05610 WP_006270043.1 1164588..1165859(+) (rarA) [Streptococcus constellatus strain FDAARGOS_1156]
MPENLAIRMRPKNIDQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGLIIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQAIQ
TALADTERGFAFPVQLDDDALDFIATSTNGDLRSAFNSLDLAVLSTSADNSGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANIV
IDLALSPKSNSAYVAIDKALSDLRQNGNLAIPRHLRDGHYAGSKELGNAQDYKYPHNYPGNWVQQNYLPEKIKNADYFTP
NENGKYERALGMTKNKIDQLKNN

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=459133 I6J13_RS05610 WP_006270043.1 1164588..1165859(+) (rarA) [Streptococcus constellatus strain FDAARGOS_1156]
ATGCCAGAAAATTTAGCTATCCGCATGCGACCTAAAAATATTGATCAGGTCATCGGTCAGAAACATCTGGTCGGCGAAGG
AAAAATTATTCGTCGCATGGTGGAAGCCAATCGTCTGTCTTCTATGATTCTCTACGGACCGCCCGGCATCGGTAAGACTT
CCATTGCTTCTGCCATCGCTGGTACTACAAAATTTGCTTTTCGGACCTTTAATGCTACCGTTGATAGTAAGAAGCGTCTG
CAAGAGATTGCAGAAGAAGCCAAGTTCTCTGGTGGTTTGGTGCTACTTTTAGATGAGATTCACCGCTTGGATAAGACAAA
GCAGGACTTCCTCCTCCCTCTGTTAGAAAACGGTCTAATCATCATGATTGGTGCCACAACAGAAAATCCTTTTTTCTCCG
TCACTCCCGCTATTCGCAGCCGGGTACAGATTTTCGAGCTGGAGCCTCTGACAAATGACGATATTAAACAAGCTATTCAA
ACAGCCTTGGCAGACACCGAACGAGGCTTTGCTTTTCCTGTCCAATTAGATGATGACGCACTGGACTTCATTGCCACTTC
CACGAATGGAGATCTACGCTCAGCCTTTAATTCTCTAGATTTAGCAGTCCTCTCTACCTCAGCGGATAATTCAGGCGTTC
GCCATATCACTCTGGATATTATGGAAAACAGCCTACAAAAGAGCTACATCACTATGGACAAGGACGGGGATGGTCACTAT
GACGTCCTGTCCGCCTTACAGAAGTCTATTCGGGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCTGGAGACCTTCCCAGCCTCGCACGACGCCTGACGGTCATTGCTTATGAAGACATTGGTTTGGCAAATCCCGATGCTC
AGATTCATACAGTGACCGCACTTGAAGCCGCTCAAAAAATTGGGTTCCCAGAAGCTCGCATCCTCATTGCCAACATTGTC
ATTGACCTAGCACTTTCTCCTAAGTCCAACTCGGCCTACGTAGCCATAGACAAAGCACTCTCTGACTTGCGCCAGAACGG
AAATCTCGCTATCCCTCGCCATCTACGAGATGGTCACTACGCTGGCAGTAAGGAGCTGGGAAATGCGCAGGATTACAAAT
ATCCACATAACTATCCTGGTAATTGGGTACAGCAAAACTACCTTCCTGAAAAAATAAAAAATGCCGATTATTTCACTCCA
AATGAAAATGGAAAGTACGAACGAGCCCTTGGCATGACTAAAAATAAGATTGATCAATTAAAAAATAACTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.287

98.818

0.596