Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6J13_RS04995 Genome accession   NZ_CP068213
Coordinates   1021081..1021869 (-) Length   262 a.a.
NCBI ID   WP_003070508.1    Uniprot ID   F9P7E1
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016081..1026869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS04970 (I6J13_04970) - 1016246..1016416 (-) 171 WP_006270305.1 hypothetical protein -
  I6J13_RS04975 (I6J13_04975) gatA 1016420..1017880 (-) 1461 WP_006270265.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  I6J13_RS04980 (I6J13_04980) gatC 1017880..1018182 (-) 303 WP_006270292.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  I6J13_RS04985 (I6J13_04985) aspS 1018259..1019995 (-) 1737 WP_006270235.1 aspartate--tRNA ligase -
  I6J13_RS04990 (I6J13_04990) - 1020506..1021081 (-) 576 WP_003031209.1 cysteine hydrolase family protein -
  I6J13_RS04995 (I6J13_04995) codY 1021081..1021869 (-) 789 WP_003070508.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6J13_RS05000 (I6J13_05000) - 1022037..1023251 (-) 1215 WP_003070510.1 pyridoxal phosphate-dependent aminotransferase -
  I6J13_RS05005 (I6J13_05005) - 1023403..1023855 (+) 453 WP_003070511.1 universal stress protein -
  I6J13_RS05010 (I6J13_05010) - 1023900..1025288 (-) 1389 WP_006270280.1 Cof-type HAD-IIB family hydrolase -
  I6J13_RS09415 - 1025398..1025855 (+) 458 Protein_992 asparaginase -
  I6J13_RS09420 - 1026009..1026314 (+) 306 WP_232565282.1 hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29721.06 Da        Isoelectric Point: 5.2508

>NTDB_id=459121 I6J13_RS04995 WP_003070508.1 1021081..1021869(-) (codY) [Streptococcus constellatus strain FDAARGOS_1156]
MANLLAKTRKITSILRRSDERLQEELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHALSIFPVETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKRRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=459121 I6J13_RS04995 WP_003070508.1 1021081..1021869(-) (codY) [Streptococcus constellatus strain FDAARGOS_1156]
ATGGCAAACTTATTAGCAAAAACACGAAAAATTACATCTATTTTGCGCCGTTCAGATGAGCGCTTACAGGAAGAATTGCC
TTACAATGCTATTACTCAGCAGTTAGCTGAGATTATGGATTGCAATGCTTGTATTGTAAACAGCAAGGGGCGTCTTTTGG
GGTATTTTATGCGCTACAAGACGAATAATGACCGGGTGGAAGCATTTTATCAAACAAAAATCTTCCCAGAAGAGTATGTT
CGCACAGCGAATTTGATGTATGATACAGAAGCTAATCTTCCTGTCAATCATGCTTTATCTATTTTTCCAGTCGAAACCAA
AGATGAATTTCCAGATGGCTTGACGACGATTTCGCCTATTCATGTATCAGGGATTCGCTTAGGAACATTGATTGTTTGGC
GAAATGATAAAGAATTTGATGATGATGACTTGATCTTAGTTGAAATTGCAAGTACAGTAGTTGGGATTCAGCTACTCAAC
TTCCAACGAGAAGAAGATGAAAAAAATATTCGACGTCGAACAGCCGTAACCATGGCTGTAAATACGCTATCTTATTCAGA
ATTACGAGCTGTTTCAGCTATTTTAGGTGAACTAAATGGTAATGAAGGACAGTTGACAGCATCGGTCATTGCAGATCGTA
TTGGGATTACTCGCTCAGTGATTGTCAATGCTTTGCGTAAACTAGAGAGTGCAGGCATTATTGAGAGTCGTTCTTTAGGA
ATGAAAGGAACCTACCTTAAAGTCCTTATTCCCGATGTCTTTGAAGAGATTAAAAGGAGAGACTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P7E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473