Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6J12_RS08480 Genome accession   NZ_CP068060
Coordinates   1799789..1802143 (+) Length   784 a.a.
NCBI ID   WP_003034029.1    Uniprot ID   I0SK11
Organism   Streptococcus anginosus strain FDAARGOS_1155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794789..1807143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J12_RS08460 (I6J12_08460) - 1796961..1797509 (-) 549 WP_003034014.1 CvpA family protein -
  I6J12_RS08465 (I6J12_08465) - 1797506..1797811 (-) 306 WP_003034036.1 hypothetical protein -
  I6J12_RS08470 (I6J12_08470) rnhC 1797897..1798787 (+) 891 WP_003034026.1 ribonuclease HIII -
  I6J12_RS08475 (I6J12_08475) lepB 1798791..1799405 (+) 615 WP_003034019.1 signal peptidase I -
  I6J12_RS08480 (I6J12_08480) recD/recD2/recDB 1799789..1802143 (+) 2355 WP_003034029.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6J12_RS08485 (I6J12_08485) - 1802189..1803383 (-) 1195 Protein_1693 ISL3 family transposase -
  I6J12_RS08490 (I6J12_08490) - 1803696..1804897 (+) 1202 Protein_1694 IS110 family transposase -
  I6J12_RS08495 (I6J12_08495) - 1805219..1805909 (-) 691 Protein_1695 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88499.84 Da        Isoelectric Point: 4.6542

>NTDB_id=458829 I6J12_RS08480 WP_003034029.1 1799789..1802143(+) (recD/recD2/recDB) [Streptococcus anginosus strain FDAARGOS_1155]
MEFYFSGTIERIIFENPSSFFRILLLDIDDTDADFDDFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLKDIAGLSAKNREAFIMKLRQNYGTERILAKLSEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSIEKGDTYLEAK
ELLEGTIELLESSRQIELDPISVADELAYLIEEDKVQNVDTKIFENSLFFAEEGIRSSLLRILEKGKQNKFEPKKIEAAI
TQIEIEFAISYDVIQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLNGLDLRKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLIVGDSDQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPPDFIEKKADRSYFEAHSEHIPKMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPAEKEQIIFEATDCQYRQGDKVIHLVNDAENNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIIYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFDFAVKN
TGTARNTYLIQRFSDLLNEEKVIHTSVDNLETTVEKYILTEENFLKINPMIGITDEDIQNVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=458829 I6J12_RS08480 WP_003034029.1 1799789..1802143(+) (recD/recD2/recDB) [Streptococcus anginosus strain FDAARGOS_1155]
ATGGAATTTTACTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTGACGACACCGATGCAGATTTTGATGATTTTGAGATTATTGTCACAGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTACACTTTTTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAACTCAAAATAACACGCTATGAGCGTGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACGGCACAAAAAATCGT
GGATCTCTATGGCGATAACACGATTGATAAGGTCTTAGCAGAGCCAGAAAAATTAAAGGATATTGCAGGGCTTTCTGCCA
AAAATCGCGAAGCTTTTATTATGAAACTAAGACAGAACTACGGTACCGAGAGAATCCTTGCCAAGCTATCTGAATACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
GTTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAACCCAGTCCATAGAAAAAGGCGACACCTATCTTGAAGCTAAG
GAATTGCTAGAGGGCACGATTGAGCTCCTCGAAAGTTCTCGTCAGATTGAGTTAGACCCAATTTCTGTTGCGGATGAGCT
GGCATATTTGATTGAAGAAGATAAAGTTCAAAATGTTGATACAAAGATTTTTGAAAATAGTCTCTTTTTTGCCGAAGAAG
GGATTCGCAGCAGTCTCCTACGCATTTTAGAAAAAGGGAAGCAAAACAAATTTGAACCGAAAAAAATCGAAGCTGCTATT
ACCCAAATCGAAATTGAGTTTGCCATTTCCTATGATGTGATTCAAAAACAAGCGATTTGTGACGCTATCAATCACAAAAT
TTTTATCCTAACGGGTGGTCCCGGAACGGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTACGCTCTGCTGAATG
GGTTGGATTTGCGCAAATCTCAAGATTTGCCTATTCTTCTAGCAGCTCCGACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCTACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACTAGCCATTTAGATGATTA
TTTGGACGCAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAATATTT
CATCAAACACCAAACTTCTCATTGTCGGAGATTCCGACCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCACAAACCAAATTAGAAAAAATTTATCGACAAAGCAAAGACTCCACTATCGTCACCTTAGC
CAGTCAGATTCAAAAAGGCATTCTGCCACCTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCATAGTG
AGCATATTCCGAAGATGATTGAGCGCATCGTAGAGGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTGCTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAAAAGA
ACAAATCATTTTTGAAGCAACGGATTGTCAATATCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAACA
ATGTCTTTAACGGCGATTTGGGTTATATCACTGATTTGCTGCCAGCCAAATATACTGATTCAAAACAGGACGAATTGACT
ATCAACTTTGACGGCAATGAGATTATTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTCCCTGTAGTCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGACTTTGCTGTCAAAAAC
ACTGGCACAGCTCGCAATACCTATCTAATCCAACGCTTTTCAGACCTGCTCAATGAAGAAAAAGTTATACACACTTCTGT
GGATAATTTGGAAACAACTGTGGAAAAATATATCTTGACTGAGGAAAATTTCTTGAAAATCAACCCTATGATTGGAATAA
CGGATGAGGATATTCAAAATGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)

AAA domain (AAA_30)

(333-531)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SK11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.633

95.281

0.397