Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CJM1_RS06465 Genome accession   NC_017280
Coordinates   1266803..1267318 (-) Length   171 a.a.
NCBI ID   WP_002877326.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni M1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1261803..1272318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM1_RS06450 (CJM1_1296) - 1261909..1263639 (-) 1731 WP_012006752.1 flagellin A -
  CJM1_RS06455 (CJM1_1297) - 1263721..1265547 (-) 1827 WP_012006753.1 motility associated factor glycosyltransferase family protein -
  CJM1_RS08580 - 1265557..1266803 (-) 1247 Protein_1245 DUF2920 family protein -
  CJM1_RS06465 (CJM1_1300) ctsG 1266803..1267318 (-) 516 WP_002877326.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CJM1_RS06470 (CJM1_1301) tsaD 1267319..1268326 (-) 1008 WP_002892992.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CJM1_RS06475 (CJM1_1302) - 1268323..1269717 (-) 1395 WP_002877328.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CJM1_RS06480 (CJM1_1303) dxr 1269719..1270789 (-) 1071 WP_002866764.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CJM1_RS06485 cdsA 1270786..1271510 (-) 725 Protein_1250 phosphatidate cytidylyltransferase -
  CJM1_RS06490 (CJM1_1306) - 1271519..1271857 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18590.45 Da        Isoelectric Point: 6.4665

>NTDB_id=45881 CJM1_RS06465 WP_002877326.1 1266803..1267318(-) (ctsG) [Campylobacter jejuni subsp. jejuni M1]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVIGVENVDLGN
FNGTKEVNFGVGNDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=45881 CJM1_RS06465 WP_002877326.1 1266803..1267318(-) (ctsG) [Campylobacter jejuni subsp. jejuni M1]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTAATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAATCGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTGGCGTAGGCAATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment