Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6J14_RS09730 Genome accession   NZ_CP068057
Coordinates   1947717..1948499 (+) Length   260 a.a.
NCBI ID   WP_003053880.1    Uniprot ID   A0A9X9SKT8
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942717..1953499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS09710 (I6J14_09710) - 1943011..1943508 (+) 498 WP_003052572.1 staphylokinase domain-containing protein -
  I6J14_RS09715 (I6J14_09715) - 1943898..1945286 (+) 1389 WP_003052568.1 Cof-type HAD-IIB family hydrolase -
  I6J14_RS09720 (I6J14_09720) - 1945449..1945901 (-) 453 WP_003052566.1 universal stress protein -
  I6J14_RS09725 (I6J14_09725) - 1946238..1947452 (+) 1215 WP_115253109.1 pyridoxal phosphate-dependent aminotransferase -
  I6J14_RS09730 (I6J14_09730) codY 1947717..1948499 (+) 783 WP_003053880.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6J14_RS09735 (I6J14_09735) - 1948637..1949188 (+) 552 WP_174221711.1 isochorismatase family cysteine hydrolase -
  I6J14_RS09740 (I6J14_09740) - 1949255..1949515 (-) 261 WP_003053835.1 metal-sensitive transcriptional regulator -
  I6J14_RS09745 (I6J14_09745) - 1949728..1950066 (+) 339 WP_115253107.1 rhodanese-like domain-containing protein -
  I6J14_RS09750 (I6J14_09750) - 1950084..1951736 (+) 1653 WP_115253106.1 FAD-dependent oxidoreductase -
  I6J14_RS09755 (I6J14_09755) - 1951729..1952028 (+) 300 WP_003052552.1 rhodanese-like domain-containing protein -
  I6J14_RS09760 (I6J14_09760) - 1952290..1952853 (+) 564 WP_340643026.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28748.89 Da        Isoelectric Point: 4.4678

>NTDB_id=458731 I6J14_RS09730 WP_003053880.1 1947717..1948499(+) (codY) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVESELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDNEFSDEDLILVEISSTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=458731 I6J14_RS09730 WP_003053880.1 1947717..1948499(+) (codY) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATTACGTCTATTCTACAGCGCTCTGTAGATAGCTTGGAGACAGAACTCCC
TTATAATACGATGGCGTCTCGCTTGGCAGATATTATTGACTGTAATGCCTGCATTATAAATGGCGGAGGAACCCTACTTG
GTTACGCCATGAAATATAAAACCAATACAGATCGTGTTGAGGAATTTTTTGAAGCTAAGCAATTTCCAGATACTTATGTC
AAAGCAGCTAGCCGTGTCTACGATACTGAGGCCAATCTTTCAGTGGAAAGTGAATTAACCATTTTTCCTGTGGAATCGAA
AGACATCTATCCAGATGGTTTGACAACGATTGCACCGATTTATGGTGGAGGTATGCGACTGGGATCTCTTATTATTTGGC
GCAACGATAATGAGTTTAGTGATGAGGACCTCATCTTGGTTGAAATTTCAAGCACGGTTGTTGGGATTCAGCTGTTAAAT
CTTCAAACAGAAAACCTGGAAGAAACGATCCGCAAGCAAACAGCTGTCAACATGGCTATTAACACCCTATCTTATTCAGA
AATGAAGGCTGTTGCAGCTATTCTTGGTGAATTGGATGGTAACGAAGGCCGTTTAACAGCTTCTGTTATTGCTGACCGTA
TCGGTATTACACGATCTGTGATCGTCAATGCCCTTCGTAAATTGGAAAGTGCTGGTATTATTGAAAGTCGCTCTCTGGGC
ATGAAGGGAACCTACCTCAAGGTTATTAATGAGGGAATTTTTGATAAATTGAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9SKT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.537

98.846

0.658
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

95

0.504