Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6J14_RS09480 Genome accession   NZ_CP068057
Coordinates   1887232..1889706 (-) Length   824 a.a.
NCBI ID   WP_115276467.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1882232..1894706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS09460 (I6J14_09460) - 1882402..1882845 (-) 444 WP_115253267.1 GNAT family N-acetyltransferase -
  I6J14_RS09465 (I6J14_09465) pflB 1882949..1885276 (-) 2328 WP_003052713.1 formate C-acetyltransferase -
  I6J14_RS09470 (I6J14_09470) dinB 1885485..1886582 (+) 1098 WP_003052709.1 DNA polymerase IV -
  I6J14_RS09475 (I6J14_09475) - 1886671..1887159 (-) 489 WP_037585028.1 hypothetical protein -
  I6J14_RS09480 (I6J14_09480) recD/recD2/recDB 1887232..1889706 (-) 2475 WP_115276467.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6J14_RS09485 (I6J14_09485) lepB 1889766..1890359 (-) 594 WP_003052704.1 signal peptidase I -
  I6J14_RS09490 (I6J14_09490) rnhC 1890371..1891279 (-) 909 WP_115253128.1 ribonuclease HIII -
  I6J14_RS09495 (I6J14_09495) - 1891436..1891744 (+) 309 WP_003052702.1 hypothetical protein -
  I6J14_RS09500 (I6J14_09500) - 1891747..1892292 (+) 546 WP_115253127.1 CvpA family protein -

Sequence

Protein


Download         Length: 824 a.a.        Molecular weight: 92095.23 Da        Isoelectric Point: 4.6491

>NTDB_id=458725 I6J14_RS09480 WP_115276467.1 1887232..1889706(-) (recD/recD2/recDB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MEHFFTGTVDRIIFENAANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKVK
PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG
LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADAIAENLGIESDSPKRFRAALLHCLLEESVSRGDTYVQAR
QLLDFTITLLEDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIAKNISHLLDTPLSQSFSHDTIQTTV
QAVQEDFAITYDQVQQEAIAKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLAAISSTTQVIIVGDSDQLPSVGPGQVLSDLL
KVNSLPQIALQKIFRQSQESTIVDLADQMRRGILAADFRDKKADRSYFEAQASFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQNLLNPLEGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYIKDLIPAKYTESKQDELILD
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEIAAFDYAIKNEG
DKRQTYLIERFQEQSDLVSSQPNQELKSKEQTSLFSNTATLEDDSQKSSSQPTNSNPTENSQSDNHNLRLTPENYSTIDP
MIGLTDSDVALFFQKKPKKTDILD

Nucleotide


Download         Length: 2475 bp        

>NTDB_id=458725 I6J14_RS09480 WP_115276467.1 1887232..1889706(-) (recD/recD2/recDB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGGAACACTTTTTTACAGGTACTGTTGACCGCATTATCTTTGAAAATGCAGCTAATTTTTTTAAAATTCTCCTCCTTGC
TATCGAAGACACAGATAGTGATATTGACGACTTTGAAATCATTATCACAGGGACGATGGCTGATATTATCGAAGGAGATG
ACTACACCTTTTGGGGAGAATTGACCCAGCACCCTAAATATGGACAGCAACTCAAACTAAGCCGTTACCAAAAAGTCAAA
CCTAGTTCATCTGGTTTGGTTAATTATTTCTCTAGCGACCATTTTAAGGGGATTGGAAAGAAAACAGCGGAGAAAATCAT
TGCCCTCTATGGCAATAATACTATTGACCATATTTTAGAAGACCCAAGTAAATTAGAAACTATCTCTGGTCTGTCCAAGG
CTAATCGTCAAGCCTTTGTCGCTAAACTGAAATTGAATTATGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTTGGC
CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGAGAAGTACAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA
GTTAGTCGAAGATTTACAAGGTTTTGGGTTTAAGATGGCAGATGCTATCGCTGAAAACTTAGGGATTGAGAGTGACTCTC
CAAAACGTTTTCGTGCCGCTCTACTGCACTGTCTCTTGGAAGAGTCCGTCAGTCGAGGAGATACTTATGTCCAAGCACGA
CAATTATTAGACTTTACCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGACCCTGCTGCTGTGGCTGAACAACT
AAGCGAGTTAATCATAGAGGGCAAAATCAAAAACAGTGACACCAAATTGTTTGATGCTAGCCTTTATTTTGCTGAAGAGG
GGATTGCTAAGAATATCTCTCATCTCTTAGATACCCCTTTAAGTCAGTCATTTAGTCATGATACCATCCAAACAACCGTC
CAAGCCGTTCAGGAAGACTTTGCTATCACCTATGACCAGGTGCAGCAAGAAGCCATTGCTAAAGCCTTAACCAGCAAGGT
ATTTCTCCTAACAGGTGGTCCCGGAACAGGGAAAACAACTGTTATTCGAGGTATTTTACAGGCTTACGCTAACCTGCATC
AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGGGCTGCACGTCGTATGAATGAGTTG
ACTGGACTTCCTAGCGCAACCATCCACAGACACTTAGGCCTCAATGGCGACAACGATTACCAAGCCATGGAAGATTATCT
GGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCCAACCAATTGTTAGCAGCGATTAGTT
CTACAACTCAAGTAATTATTGTCGGAGATAGTGACCAGCTTCCTTCGGTTGGACCCGGTCAAGTCCTGTCAGATCTTTTA
AAAGTCAATAGCCTACCCCAAATCGCCTTGCAGAAAATCTTTCGTCAATCCCAAGAATCTACTATTGTAGATTTGGCAGA
CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGATAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCCTCTT
TCATCCCGGACATGATTCAAAAAATTGTTCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGGAAATTCAAATTTTAGCG
CCTATGTACAAAGGACAGGCTGGCATCAATCATCTTAACCAATTGATGCAAAACCTCCTCAATCCTTTGGAAGGGCAAAC
GGAATTTCTGTTCAATGATACGCATTTTCGTAAAGGTGATAAAGTCTTGCACTTAGTCAACGATGCTCAGTTGAATGTCT
TTAATGGAGATATTGGTTATATTAAAGATTTGATTCCTGCTAAATATACCGAATCTAAACAAGACGAATTAATCTTAGAT
TTTGACGGTAGCGAGGTAACATATCCTAGAAATGAATGGCTAAAATTAACCCTAGCCTATGCCATGAGCATTCATAAGTC
GCAAGGGAGCGAGTTTCAAGTGGTAATTTTACCCATCACACGCCAAAGCGGCCGACTTTTGCAACGAAATTTGATTTACA
CAGCGATTACTCGATCTAAAAGTAAATTGATTATGCTAGGCGAAATCGCTGCCTTTGATTACGCCATCAAAAATGAAGGA
GATAAGCGCCAAACCTACTTGATTGAACGTTTTCAAGAACAATCCGACTTAGTCTCCTCTCAACCTAACCAAGAGCTAAA
ATCAAAAGAGCAGACCTCCCTTTTTTCTAATACGGCCACCCTTGAGGACGACTCTCAAAAATCTTCCTCTCAACCAACAA
ACTCTAATCCCACTGAGAACTCTCAGTCAGATAATCACAATCTTAGGTTAACACCTGAGAATTATTCGACTATCGATCCG
ATGATAGGGCTTACAGACTCAGATGTTGCCCTCTTTTTCCAGAAAAAACCTAAAAAAACGGATATTCTCGATTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-522)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.44

91.505

0.388