Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6J15_RS02225 Genome accession   NZ_CP068056
Coordinates   450389..451657 (+) Length   422 a.a.
NCBI ID   WP_167394760.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 445389..456657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS02195 (I6J15_02195) - 445392..446409 (-) 1018 Protein_418 LacI family DNA-binding transcriptional regulator -
  I6J15_RS02200 (I6J15_02200) - 446506..447249 (-) 744 WP_058833282.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  I6J15_RS02205 (I6J15_02205) prmA 447250..448203 (-) 954 WP_058813588.1 50S ribosomal protein L11 methyltransferase -
  I6J15_RS02210 (I6J15_02210) - 448470..449369 (-) 900 Protein_421 GIY-YIG nuclease family protein -
  I6J15_RS02215 (I6J15_02215) - 449371..449841 (-) 471 WP_020916029.1 DUF3013 family protein -
  I6J15_RS02220 (I6J15_02220) - 449905..450399 (+) 495 WP_020916028.1 GNAT family N-acetyltransferase -
  I6J15_RS02225 (I6J15_02225) rarA 450389..451657 (+) 1269 WP_167394760.1 replication-associated recombination protein A Machinery gene
  I6J15_RS02240 (I6J15_02240) - 452152..453471 (-) 1320 WP_111712573.1 FAD-containing oxidoreductase -
  I6J15_RS02245 (I6J15_02245) - 453520..453741 (-) 222 WP_020916018.1 DUF4649 family protein -
  I6J15_RS02250 (I6J15_02250) - 453958..454989 (-) 1032 WP_111712572.1 aldose epimerase family protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46623.94 Da        Isoelectric Point: 6.3551

>NTDB_id=458555 I6J15_RS02225 WP_167394760.1 450389..451657(+) (rarA) [Streptococcus lutetiensis strain FDAARGOS_1158]
MPNNLALRMRPKNIDQVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSTDDIKQALQ
TALSDKERGFEFGVDIDADALDFIATATNGDLRSAFNSLDLAVMSTKADDKGIRHINLDTVENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYTAIDEAITDLHKNGSLPIPRHLRDGHYAGSKELGNAQDYKYPHNYPEKWVKQQYLPDKLVEKNYFDA
NQTGKYERALGANKERIDELSK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=458555 I6J15_RS02225 WP_167394760.1 450389..451657(+) (rarA) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGCCAAATAATCTCGCTTTGCGAATGCGCCCTAAGAATATTGACCAAGTGATTGGCCAGAAACATCTAGTCGGTGAAGG
AAAAATCATTCGCCGTATGGTGGAGGCCAATATGCTGTCATCAATGATTCTCTACGGTCCTCCTGGTATCGGGAAGACCT
CAATCGCTAGCGCTATCGCAGGAACAACCAAATACGCTTTTCGGACGTTCAACGCTACAACAGACAGTAAAAAGCGCCTG
CAAGAAATTGCCGAGGAAGCTAAATTTTCTGGTGGACTGGTTTTACTGCTCGATGAAATCCATCGTCTTGATAAAACCAA
ACAAGATTTTCTACTACCATTGCTTGAAAACGGCAATATCATCATGATTGGAGCGACAACTGAAAATCCATTTTTCTCAG
TGACACCTGCCATTCGCTCACGCGTGCAAATCTTCGAGTTAGAACCCTTATCAACCGACGATATCAAGCAAGCCCTCCAA
ACTGCATTATCAGATAAAGAGCGCGGCTTTGAATTTGGTGTCGATATTGATGCGGATGCTCTTGATTTCATCGCAACAGC
TACCAACGGTGATTTGCGCTCTGCCTTTAACTCGCTAGATTTAGCAGTCATGTCAACCAAGGCTGATGACAAAGGTATTC
GCCACATTAACCTTGATACCGTTGAAAATAGCTTGCAGCGAAGCTACATTACCATGGATAAAAACGGCGATGGACACTAC
GATGTGCTCTCAGCCCTTCAAAAATCCATCCGTGGTTCTGACGTCAATGCTAGCCTGCATTACGCTGCTCGTCTGATTGA
AGCTGGGGATCTGCCAAGCCTTGCTAGAAGACTGACTGTTATCGCGTATGAAGACATTGGTCTTGCCAATCCAGATGCCC
AGATTCATACCGTTACAGCACTTGATGCTGCTCAAAAAATCGGTTTTCCTGAAGCACGCATCTTGATTGCTAACGTCGTA
ATTGATCTAGCCTTGTCACCAAAATCAAATTCAGCCTACACAGCTATTGACGAAGCTATCACTGATTTGCACAAAAACGG
CTCACTACCAATCCCACGCCATTTACGTGATGGTCACTATGCTGGTAGCAAAGAACTTGGTAACGCCCAAGATTACAAAT
ACCCTCACAACTATCCTGAAAAATGGGTTAAACAGCAGTATTTACCAGATAAGTTAGTCGAAAAAAATTATTTTGATGCT
AACCAAACCGGAAAATACGAACGCGCCCTCGGTGCTAACAAAGAGCGAATTGATGAACTGTCTAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.621

99.289

0.602