Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWV03_RS00935 Genome accession   NZ_CP056120
Coordinates   199821..200441 (+) Length   206 a.a.
NCBI ID   WP_211678095.1    Uniprot ID   -
Organism   Moritella sp. 36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 194821..205441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV03_RS00920 (HWV03_00920) - 194892..197075 (-) 2184 WP_211678093.1 polysaccharide biosynthesis tyrosine autokinase -
  HWV03_RS00925 (HWV03_00925) - 197295..198116 (-) 822 WP_255546993.1 LuxR C-terminal-related transcriptional regulator -
  HWV03_RS00930 (HWV03_00930) - 198446..199819 (+) 1374 WP_211678094.1 MFS transporter -
  HWV03_RS00935 (HWV03_00935) ssb 199821..200441 (+) 621 WP_211678095.1 single-stranded DNA-binding protein Machinery gene
  HWV03_RS00940 (HWV03_00940) - 200847..202661 (+) 1815 WP_211678096.1 hypothetical protein -
  HWV03_RS00945 (HWV03_00945) - 202941..204854 (+) 1914 WP_211678097.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22760.83 Da        Isoelectric Point: 5.2358

>NTDB_id=458208 HWV03_RS00935 WP_211678095.1 199821..200441(+) (ssb) [Moritella sp. 36]
MASRGVNKVIILGNLGNDPEIRSFPNGGAVANLTIATSESWRDKQTGEQREKTEWHRVAVFGKLAEIAGEYLRKGSQVYI
EGALQTRKWQDQNGQDRFTTEVVVQGFNGVMQMIGSRQGGQQQQQGGYNQQPQQQQNQNAGWGQPQQPAAAPQQQGGYNQ
QPQQQQAPQQQSYAPKQQAPAPAPQQQAPQQGFNEPSADFDDDIPF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=458208 HWV03_RS00935 WP_211678095.1 199821..200441(+) (ssb) [Moritella sp. 36]
ATGGCCAGTCGTGGCGTAAATAAAGTAATTATTCTTGGTAATTTAGGTAATGATCCTGAAATCCGCTCATTTCCAAATGG
TGGCGCGGTTGCCAATCTAACGATTGCGACAAGTGAATCATGGCGTGATAAGCAAACTGGTGAACAGCGTGAAAAAACCG
AATGGCACCGTGTTGCTGTATTCGGTAAACTTGCTGAAATTGCGGGTGAATACTTACGTAAAGGTTCTCAGGTATATATT
GAAGGCGCATTACAAACACGTAAATGGCAAGATCAAAATGGCCAAGATCGTTTTACAACAGAAGTTGTAGTACAAGGTTT
TAACGGTGTAATGCAAATGATTGGTTCGCGTCAAGGCGGTCAACAACAGCAGCAGGGCGGTTATAACCAACAGCCACAGC
AACAGCAGAACCAAAATGCTGGTTGGGGTCAGCCACAACAGCCTGCAGCTGCACCACAACAACAAGGCGGTTATAACCAA
CAGCCACAGCAACAACAGGCACCGCAACAGCAAAGCTATGCTCCTAAACAGCAAGCTCCTGCTCCAGCGCCTCAACAGCA
AGCGCCGCAGCAAGGTTTTAACGAACCCTCTGCAGACTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

63.285

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.475

98.058

0.515
  ssb Neisseria gonorrhoeae MS11

40.887

98.544

0.403
  ssb Neisseria meningitidis MC58

40.291

100

0.403