Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C663_RS06215 Genome accession   NC_020244
Coordinates   1226535..1227452 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis XF-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1221535..1232452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS06200 (C663_1169) trpS 1222115..1223107 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  C663_RS06205 (C663_1170) oppA 1223851..1225488 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  C663_RS06210 (C663_1171) oppB 1225596..1226531 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  C663_RS06215 (C663_1172) amiD 1226535..1227452 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  C663_RS06220 (C663_1173) oppD 1227457..1228533 (+) 1077 WP_080030655.1 oligopeptide ABC transporter ATP-binding protein OppD -
  C663_RS06225 (C663_1174) oppF 1228535..1229452 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  C663_RS06230 (C663_1175) yjbB 1229558..1230775 (+) 1218 WP_080030656.1 MFS transporter -
  C663_RS06235 (C663_1176) yjbC 1230939..1231514 (+) 576 WP_015383352.1 GNAT family N-acetyltransferase -
  C663_RS06240 (C663_1177) spx 1231695..1232090 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=45747 C663_RS06215 WP_003232954.1 1226535..1227452(+) (amiD) [Bacillus subtilis XF-1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=45747 C663_RS06215 WP_003232954.1 1226535..1227452(+) (amiD) [Bacillus subtilis XF-1]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364