Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JJB18_RS02295 Genome accession   NZ_CP067241
Coordinates   502835..503302 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain P19_598     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497835..508302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB18_RS02270 (JJB18_02270) rpsG 497976..498446 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JJB18_RS02275 (JJB18_02275) fusA 498543..500657 (+) 2115 WP_000124700.1 elongation factor G -
  JJB18_RS02280 (JJB18_02280) tuf 500728..501912 (+) 1185 WP_000031783.1 elongation factor Tu -
  JJB18_RS02285 (JJB18_02285) bfd 502095..502289 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JJB18_RS02290 (JJB18_02290) bfr 502362..502838 (+) 477 WP_000675515.1 bacterioferritin -
  JJB18_RS02295 (JJB18_02295) pilD 502835..503302 (-) 468 WP_000340159.1 A24 family peptidase Machinery gene
  JJB18_RS02300 (JJB18_02300) rpsJ 503681..503992 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JJB18_RS02305 (JJB18_02305) rplC 504025..504654 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JJB18_RS02310 (JJB18_02310) rplD 504665..505270 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JJB18_RS02315 (JJB18_02315) rplW 505267..505569 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JJB18_RS02320 (JJB18_02320) rplB 505587..506408 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JJB18_RS02325 (JJB18_02325) rpsS 506425..506703 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JJB18_RS02330 (JJB18_02330) rplV 506718..507050 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JJB18_RS02335 (JJB18_02335) rpsC 507068..507769 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JJB18_RS02340 (JJB18_02340) rplP 507782..508192 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=457291 JJB18_RS02295 WP_000340159.1 502835..503302(-) (pilD) [Escherichia coli strain P19_598]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=457291 JJB18_RS02295 WP_000340159.1 502835..503302(-) (pilD) [Escherichia coli strain P19_598]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368