Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HUW50_RS01450 Genome accession   NZ_CP055263
Coordinates   280451..282817 (-) Length   788 a.a.
NCBI ID   WP_066334497.1    Uniprot ID   -
Organism   Metabacillus sp. KUDC1714     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 275451..287817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW50_RS01430 (HUW50_01430) - 278349..279410 (-) 1062 WP_066334509.1 AI-2E family transporter -
  HUW50_RS01435 (HUW50_01435) - 279586..279717 (-) 132 WP_066334504.1 YrzQ family protein -
  HUW50_RS01440 (HUW50_01440) - 279732..279923 (-) 192 WP_066334501.1 hypothetical protein -
  HUW50_RS01445 (HUW50_01445) - 279945..280418 (-) 474 WP_066334499.1 PRC-barrel domain-containing protein -
  HUW50_RS01450 (HUW50_01450) recD2 280451..282817 (-) 2367 WP_066334497.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HUW50_RS01455 (HUW50_01455) - 282851..283510 (-) 660 WP_185653643.1 tetratricopeptide repeat protein -
  HUW50_RS01460 (HUW50_01460) mnmA 283630..284742 (-) 1113 WP_066334491.1 tRNA 2-thiouridine(34) synthase MnmA -
  HUW50_RS01465 (HUW50_01465) - 284765..285904 (-) 1140 WP_066334485.1 cysteine desulfurase family protein -
  HUW50_RS01470 (HUW50_01470) cymR 285941..286357 (-) 417 WP_066334484.1 cysteine metabolism transcriptional regulator CymR -
  HUW50_RS01475 (HUW50_01475) - 286368..287051 (-) 684 WP_066334482.1 YitT family protein -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88831.66 Da        Isoelectric Point: 5.0137

>NTDB_id=457280 HUW50_RS01450 WP_066334497.1 280451..282817(-) (recD2) [Metabacillus sp. KUDC1714]
MQESADLFGENERFVKGLVKVVIFHNEQNLYSVLKVRVHETSENIEDKEITVTGYFPLLHEDDTYTFFGTFKNHPKFGLQ
FQTEHFRKEIPQTKEGIIQYLSSDLFKGIGKKTAEAIVEKLGESAISKILQNPSILDDIPKVNKDKAKQLVESLISHQGL
EQIMIALNQFGFGPQLAMKIYQVYQDQTLTIIQENPYQLVHDVEGIGFVRADELGQHLGISEKSAERIKAACLYIIEHMS
LQEGHVYLTLEQLIVRTKELLDHSKQENIHETDIATEISALNNEKKVIVEEERAYIPSLYYAEQGLVKNIKKVLAQTEYD
DLFPESEFLLSLGNLEERMKVQYAPTQKDAIQQALMSPMLLLTGGPGTGKTTVIKGIVELYADLHGCSLEPKDYKKEEPF
PILLVAPTGRAAKRMSEATGMPAVTIHRLLKWNGADGFEHDEDNPISGKLLIVDEVSMVDLWIANQLFKALPEKIQVIMV
GDEDQLPSVGPGQVLRDLLASKIIPTVQLTDIYRQAEGSSIIELAHDIKQGKLPQNITSPTSDRSFIQCSQAQMKEVIGK
VIKSAINKGYTARDIQILAPMYKGPAGIDQLNKLLQELFNPKTPGKREMTFGDTIYRNGDKVLQLVNQPDSNVFNGDIGE
IVSIFYAKENTEKEDMIVVSFDGNEVTYIKQDFNQFTHAFCCSIHKSQGSEFPIVVMPIVKGYYRMLRRNLIYTAITRSK
RSLVICGEKDALQWGISNSDSSDRQTSLKIKLNGFEEVDELQKELPFPVQDANIGMENVTPYDFMEEG

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=457280 HUW50_RS01450 WP_066334497.1 280451..282817(-) (recD2) [Metabacillus sp. KUDC1714]
ATGCAGGAAAGTGCTGATTTATTTGGGGAAAATGAACGTTTTGTTAAAGGACTTGTAAAGGTTGTTATTTTTCACAATGA
GCAAAACTTATATTCAGTGTTAAAAGTAAGAGTTCATGAAACAAGTGAAAATATTGAAGATAAAGAGATAACCGTTACAG
GTTACTTTCCACTCCTGCATGAAGATGACACCTATACCTTTTTTGGAACATTTAAAAACCACCCCAAATTTGGTCTTCAA
TTTCAAACTGAACATTTTCGAAAAGAAATCCCTCAAACAAAGGAAGGGATTATTCAATATTTATCGAGTGATCTTTTCAA
AGGGATAGGCAAAAAGACAGCGGAAGCTATTGTTGAGAAACTAGGTGAATCAGCAATTTCAAAAATTCTGCAAAACCCTT
CGATTTTAGATGATATTCCAAAGGTAAATAAAGATAAAGCGAAACAACTTGTCGAGTCATTAATATCCCATCAAGGGCTA
GAGCAAATAATGATAGCACTCAATCAATTTGGTTTTGGACCTCAACTTGCCATGAAAATTTATCAAGTCTATCAAGATCA
AACCTTGACAATAATTCAAGAGAATCCATATCAATTGGTTCATGATGTTGAAGGAATAGGATTTGTGCGAGCAGATGAGC
TTGGTCAGCATTTAGGTATTTCTGAAAAAAGCGCAGAAAGAATTAAAGCTGCATGTCTTTATATTATTGAACATATGAGC
TTACAAGAAGGACATGTTTATTTAACATTAGAACAGCTAATTGTAAGAACGAAGGAATTACTTGATCATTCAAAACAAGA
GAATATTCATGAAACAGATATTGCAACTGAAATATCCGCATTAAACAATGAAAAAAAAGTGATCGTTGAAGAAGAACGGG
CATATATACCATCTCTTTATTACGCGGAACAAGGATTAGTAAAAAACATAAAAAAAGTACTAGCACAAACGGAATATGAT
GACCTATTTCCTGAGTCTGAATTTTTGCTTTCGCTTGGTAACCTCGAAGAAAGAATGAAGGTACAATATGCTCCAACTCA
AAAGGATGCAATTCAACAGGCGTTAATGTCTCCAATGCTTTTATTAACAGGAGGTCCTGGAACAGGTAAAACAACTGTTA
TAAAGGGAATTGTTGAATTATATGCAGATTTACATGGATGTTCTCTTGAACCAAAGGATTATAAAAAAGAAGAACCATTT
CCGATTTTACTTGTTGCACCAACAGGACGTGCGGCAAAACGAATGAGTGAAGCAACAGGTATGCCAGCTGTTACGATTCA
TCGTCTTTTGAAGTGGAATGGTGCTGATGGTTTTGAGCATGATGAAGATAATCCGATTTCAGGAAAACTGCTCATTGTAG
ATGAGGTGTCAATGGTTGATTTATGGATTGCGAATCAATTGTTTAAAGCACTTCCCGAAAAAATCCAAGTAATAATGGTT
GGGGATGAGGATCAGCTCCCATCAGTAGGTCCTGGTCAGGTGCTTCGTGATTTATTAGCCTCCAAAATCATCCCAACGGT
CCAACTAACCGATATATATCGTCAAGCAGAAGGGTCATCAATAATTGAGCTTGCACACGATATAAAGCAAGGTAAATTGC
CGCAAAATATTACATCTCCAACCTCTGACAGGTCATTTATCCAATGCTCACAGGCGCAAATGAAAGAGGTAATTGGAAAG
GTAATTAAAAGTGCTATCAACAAAGGCTATACAGCGAGAGATATTCAAATTTTAGCACCAATGTATAAAGGTCCAGCAGG
GATTGATCAATTAAACAAACTGCTTCAAGAGCTTTTTAACCCTAAAACACCTGGAAAAAGAGAAATGACATTTGGTGATA
CCATCTATCGGAATGGTGATAAAGTTCTCCAATTGGTCAATCAGCCTGATAGTAATGTCTTTAACGGTGATATTGGAGAG
ATAGTTTCAATTTTTTATGCAAAAGAAAATACCGAAAAAGAAGATATGATTGTCGTTTCCTTTGATGGCAATGAGGTTAC
CTATATAAAACAAGATTTTAACCAGTTTACTCATGCGTTTTGCTGCTCGATCCATAAATCACAGGGTAGTGAATTTCCGA
TTGTTGTGATGCCTATTGTAAAAGGATATTATCGAATGCTTCGTCGAAATTTAATTTATACTGCAATTACAAGGAGTAAG
CGGTCTTTGGTTATATGTGGGGAAAAAGATGCTTTACAGTGGGGGATTTCCAATAGCGATAGTTCAGACAGGCAGACAAG
TCTTAAAATTAAGCTAAATGGTTTTGAGGAAGTAGACGAATTACAAAAAGAGCTTCCATTCCCTGTCCAAGATGCAAATA
TTGGAATGGAAAACGTTACACCGTATGACTTTATGGAAGAAGGCTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(343-550)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

67.799

100

0.684