Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BLNIAS_RS00130 Genome accession   NC_017221
Coordinates   43519..45348 (+) Length   609 a.a.
NCBI ID   WP_014485250.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. longum KACC 91563     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 38519..50348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLNIAS_RS00115 (BLNIAS_00040) - 39802..40365 (-) 564 WP_014485246.1 BRO family protein -
  BLNIAS_RS00120 - 40727..41246 (+) 520 Protein_25 MarR family winged helix-turn-helix transcriptional regulator -
  BLNIAS_RS00125 (BLNIAS_00043) rcrP 41433..43304 (+) 1872 WP_014485249.1 ABC transporter ATP-binding protein Regulator
  BLNIAS_RS00130 (BLNIAS_00045) rcrQ 43519..45348 (+) 1830 WP_014485250.1 ABC transporter ATP-binding protein Regulator
  BLNIAS_RS00135 (BLNIAS_00049) - 45500..46546 (-) 1047 WP_014485251.1 FAD:protein FMN transferase -
  BLNIAS_RS00140 (BLNIAS_00050) - 46628..48046 (+) 1419 WP_011068650.1 MFS transporter -
  BLNIAS_RS00150 (BLNIAS_00052) rsmI 48744..49754 (+) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BLNIAS_RS11640 - 49781..50158 (-) 378 WP_007052935.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66679.98 Da        Isoelectric Point: 5.8204

>NTDB_id=45619 BLNIAS_RS00130 WP_014485250.1 43519..45348(+) (rcrQ) [Bifidobacterium longum subsp. longum KACC 91563]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIINDFSASVKAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=45619 BLNIAS_RS00130 WP_014485250.1 43519..45348(+) (rcrQ) [Bifidobacterium longum subsp. longum KACC 91563]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGTTTCCTTGAAGAGCC
GGAGATGGAGGACGAATCCGGCAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCCTCCGTCAAGGCCGGTCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTATGAGATTTCCGGCGGTTCGAT
TTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGTGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCTGGCGTGACCGACAAGCAGATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGTGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGCTTTGTGATC
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGACGAGCTGCTGGCGGCGGGCGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGCGCTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(387-534)

ABC transporter transmembrane region (ABC_membrane)

(37-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.359

96.059

0.522

Multiple sequence alignment