Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BLIJ_RS12575 Genome accession   NC_017219
Coordinates   2726382..2728253 (-) Length   623 a.a.
NCBI ID   WP_012578654.1    Uniprot ID   B7GP93
Organism   Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2728489..2739695 2726382..2728253 flank 236


Gene organization within MGE regions


Location: 2726382..2739695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLIJ_RS12575 (BLIJ_2505) rcrP 2726382..2728253 (-) 1872 WP_012578654.1 ABC transporter ATP-binding protein Regulator
  BLIJ_RS12580 (BLIJ_2506) - 2728489..2729019 (-) 531 WP_012578655.1 MarR family transcriptional regulator -
  BLIJ_RS12585 (BLIJ_2507) - 2729173..2730696 (-) 1524 WP_012578656.1 amino acid permease -
  BLIJ_RS12590 (BLIJ_2508) - 2730884..2734504 (-) 3621 WP_012578657.1 FtsX-like permease family protein -
  BLIJ_RS12595 (BLIJ_2509) - 2734593..2735294 (-) 702 WP_012578658.1 ABC transporter ATP-binding protein -
  BLIJ_RS12600 (BLIJ_2510) - 2735541..2737022 (+) 1482 WP_041982193.1 amino acid permease -
  BLIJ_RS12605 (BLIJ_2511) - 2737170..2737805 (-) 636 WP_012578660.1 YesL family protein -
  BLIJ_RS12610 (BLIJ_2512) - 2737999..2738841 (-) 843 WP_012578661.1 carbohydrate ABC transporter permease -
  BLIJ_RS12615 (BLIJ_2513) - 2738841..2739695 (-) 855 WP_012578662.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68025.59 Da        Isoelectric Point: 5.4498

>NTDB_id=45617 BLIJ_RS12575 WP_012578654.1 2726382..2728253(-) (rcrP) [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]
MFRIMKYLSKAEIGQMLVALLTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAVITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVGNGTKTAADVAKTGQRGTVEFRNVGFTYPDSREAMLEGISFTATQGQTVAFIGSTGSGKSSLINLVPRFYDVSEGQV
LVDGVDVRDYDLKTLRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMTDSSTASGRKHETALLAADKAAQDAGLPA
ERMERVKAAADVAQASEFVARMDGGYAAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSIKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHRELLEHCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=45617 BLIJ_RS12575 WP_012578654.1 2726382..2728253(-) (rcrP) [Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088]
ATGTTCCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCCCTGCTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTACATGTCAGACATCACCACCTTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGCTCCGTGGCGTGCGCCGTCATCACCGGCTACATAGCCGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTTCGGACCGGCCGAGATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTATGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAGTTCAAGGCGATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGAGTCCAAGTTCACCAAGGCCAACAAGGACCTCACCGAAACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAATGGTCTGATGCTCGCCGTCTACTGGATCGGCGCCTACCTGATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTTTCGGCGCAGCGCATCATGGAAGTGCTCGACACCGAG
CCGATCGTCGGCAACGGCACCAAGACCGCCGCCGACGTGGCCAAGACCGGCCAGCGCGGCACCGTGGAATTCCGCAACGT
CGGCTTCACCTACCCGGACTCGCGCGAAGCGATGCTCGAAGGCATCAGCTTCACCGCCACGCAAGGCCAGACCGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAATCGTCGCTGATCAACCTCGTGCCGCGCTTCTATGACGTCAGCGAAGGCCAGGTG
CTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGACCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTATGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGACGGACA
GCTCCACCGCCTCCGGCCGCAAGCACGAGACCGCACTGCTCGCCGCGGACAAGGCCGCGCAGGACGCCGGCCTGCCGGCC
GAGCGGATGGAGCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAATTCGTGGCGCGCATGGACGGCGGATACGC
CGCCGCGATCGCACAGGGCGGCTCGAACGTGTCCGGCGGCCAGAAGCAGCGACTGTCCATCGCACGCGCGGTGTACCGGC
ATCCGGAGATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAGGTGCGCGACGCGCTCGCC
CGCGAAGCCAAGGACTCCATCAAACTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGCCAGGGCACGCACCGGGAACTGCTCGAACACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(54-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7GP93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.499

100

0.493

Multiple sequence alignment