Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JFJ84_RS05830 Genome accession   NZ_CP066739
Coordinates   1206425..1207765 (+) Length   446 a.a.
NCBI ID   WP_199275116.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1201425..1212765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFJ84_RS05805 (JFJ84_05800) - 1202187..1202909 (-) 723 WP_011608971.1 phosphotransferase -
  JFJ84_RS05810 (JFJ84_05805) - 1203042..1203518 (+) 477 WP_012340445.1 low molecular weight protein-tyrosine-phosphatase -
  JFJ84_RS05815 (JFJ84_05810) - 1203603..1204991 (-) 1389 WP_041605098.1 Do family serine endopeptidase -
  JFJ84_RS05820 (JFJ84_05815) - 1205120..1205533 (-) 414 WP_012340443.1 YhcB family protein -
  JFJ84_RS05825 (JFJ84_05820) lolA 1205745..1206359 (+) 615 WP_012340442.1 outer membrane lipoprotein chaperone LolA -
  JFJ84_RS05830 (JFJ84_05825) rarA 1206425..1207765 (+) 1341 WP_199275116.1 replication-associated recombination protein A Machinery gene
  JFJ84_RS05835 (JFJ84_05830) - 1207818..1208426 (-) 609 WP_012340440.1 riboflavin synthase -
  JFJ84_RS05840 (JFJ84_05835) - 1208480..1209874 (+) 1395 WP_012340439.1 MATE family efflux transporter -
  JFJ84_RS05845 (JFJ84_05840) hemA 1209886..1211187 (-) 1302 WP_012340438.1 glutamyl-tRNA reductase -
  JFJ84_RS05850 (JFJ84_05845) gloB 1211298..1211999 (-) 702 WP_012340437.1 hydroxyacylglutathione hydrolase -
  JFJ84_RS05855 (JFJ84_05850) - 1212033..1212758 (+) 726 WP_012340436.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50040.79 Da        Isoelectric Point: 7.6009

>NTDB_id=455750 JFJ84_RS05830 WP_199275116.1 1206425..1207765(+) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-069]
MSTFSLDFSHXXFQPLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQQIHAQVER
ISAVTAGVKEIRESIERAKQNRLMGQQTILFVDEVHRFNKTQQDAFLPHIENGTIIFIGATTENPSFELNNALLSRVKVY
ILKPLTTSNIVTVLQNAIQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINHRLLTEVL
GERQARFDKQGDRFYDLISALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYVAFKQAKKLAKEMPDYDVPVHLRNAPTHLMKELGYGAEYRYAHDEPNAYAA
GENYFPKELKDTKFYFPTDRGLEIQLKEKLARLHNLDEQSTKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=455750 JFJ84_RS05830 WP_199275116.1 1206425..1207765(+) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-069]
ATGTCCACTTTTTCACTTGATTTCTCTCACWCKSCATTTCAACCCTTAGCCGCAAAAATGAGACCGCAAACACTGAAGCA
ATATTGTGGCCAAGAACATTTAATCGGAGCTGGAAAGCCACTATATAAAGCCATTGAAAACGGACATATTCATTCTATGA
TTTTTTGGGGCCCGCCTGGTACAGGAAAAACAACGCTGGCAGAGATTATTGCACAACAAATTCATGCCCAAGTTGAGCGT
ATTTCTGCAGTTACCGCCGGAGTGAAAGAGATTCGGGAAAGTATTGAACGGGCAAAACAAAACCGTTTAATGGGTCAACA
AACTATTTTATTTGTTGATGAAGTTCACCGTTTTAATAAAACCCAACAAGATGCTTTTTTGCCTCATATTGAAAACGGCA
CTATCATTTTTATAGGTGCAACCACAGAAAATCCATCATTTGAATTAAATAATGCGTTACTCTCTCGTGTCAAAGTTTAT
ATTTTGAAACCTTTAACTACATCTAATATTGTGACAGTGTTACAAAATGCCATCCAAGATGCAGAGCAAGGATTGGGAAA
AGAGCGGTTGATTTTCGCTGAAAATGTTCTTGAAACCTTAGCTGAATATGTCAATGGGGATGCCCGTTTAGCACTAAATT
GTTTAGAACTCATGGTGGATATGGCAGATGAAACAGAAAAAGGGAAATTGATTAATCATCGTCTCCTAACTGAAGTATTA
GGGGAACGACAGGCTCGCTTCGACAAGCAAGGGGATCGATTTTATGATCTAATTTCCGCTCTACATAAATCTATTCGTGG
CTCCGCTCCCGATGCTGCTTTATATTGGTATGCTAGAATTATTACTGCCGGAGGTGATCCTCTCTATGTTGCAAGGCGTT
TATTAGCTATTGCCTCCGAAGACGTAGGCAATGCCGATCCGAGAGCAATGCAAGTAGCACTTGCAGCATGGGATTGTTTT
ACTCGAGTTGGTGCAGCTGAAGGAGAACGTGCTATCGCACAAGCGATTGTATATTTAGCTGTTGCACCTAAAAGTAACGC
TGTATATGTTGCCTTTAAACAAGCAAAAAAACTCGCAAAAGAAATGCCGGATTATGATGTACCGGTACATTTGCGTAATG
CACCAACTCATTTAATGAAAGAGTTGGGATATGGAGCAGAATATCGTTATGCTCATGATGAACCTAATGCCTATGCGGCA
GGAGAAAATTATTTTCCAAAAGAATTAAAAGATACGAAATTTTATTTTCCTACAGATCGTGGACTGGAAATTCAACTTAA
AGAAAAATTAGCACGATTGCATAATTTAGATGAGCAAAGCACAAAAAAACGCTATAAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.771

94.843

0.368