Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CT43_RS19315 Genome accession   NC_017208
Coordinates   3843239..3844018 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis serovar chinensis CT-43     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838239..3849018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT43_RS19290 (CT43_CH3822) uppS 3838987..3839763 (-) 777 WP_000971298.1 isoprenyl transferase -
  CT43_RS19295 (CT43_CH3823) frr 3839849..3840406 (-) 558 WP_000531505.1 ribosome recycling factor -
  CT43_RS19300 (CT43_CH3824) pyrH 3840409..3841131 (-) 723 WP_000042669.1 UMP kinase -
  CT43_RS19305 (CT43_CH3825) tsf 3841198..3842085 (-) 888 WP_001018577.1 translation elongation factor Ts -
  CT43_RS19310 (CT43_CH3826) rpsB 3842189..3842890 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  CT43_RS19315 (CT43_CH3827) codY 3843239..3844018 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CT43_RS19320 hslU 3844096..3845486 (-) 1391 Protein_3858 ATP-dependent protease ATPase subunit HslU -
  CT43_RS19325 (CT43_CH3830) hslV 3845509..3846051 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  CT43_RS19330 (CT43_CH3831) xerC 3846094..3846993 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  CT43_RS19335 (CT43_CH3832) trmFO 3847059..3848363 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=45558 CT43_RS19315 WP_000421290.1 3843239..3844018(-) (codY) [Bacillus thuringiensis serovar chinensis CT-43]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=45558 CT43_RS19315 WP_000421290.1 3843239..3844018(-) (codY) [Bacillus thuringiensis serovar chinensis CT-43]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACTTTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment